Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P08
(254 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 98 7e-22
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 97 2e-21
02_05_1050 - 33757432-33757664,33757767-33758645,33758720-337591... 28 0.90
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 28 1.2
02_05_1089 + 34019162-34019164,34019249-34019465,34019558-340197... 28 1.2
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658... 28 1.2
03_02_0044 - 5245204-5245538,5245946-5246093,5246182-5247395,524... 27 1.6
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 27 2.1
07_03_1439 - 26556398-26556418,26556700-26557743 27 2.8
08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073 26 4.8
03_05_0908 + 28686855-28687328 25 6.4
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107... 25 8.4
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 25 8.4
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 25 8.4
01_06_0770 - 31844132-31844749 25 8.4
01_01_0580 + 4305984-4307282,4308610-4308678 25 8.4
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 98.3 bits (234), Expect = 7e-22
Identities = 43/72 (59%), Positives = 56/72 (77%)
Frame = +2
Query: 23 MSSLELQKRLAASVMRCGKQKVWLDPNEIHEIANTSSRQNIRKMIKDGLVIKKPVAVHSL 202
M SL+LQKRLAASV++CGK KVWLDPNE++EI+ +SRQNIRK++KDG +IKKP +HS
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 203 CSCSQKHRGAQE 238
+ H Q+
Sbjct: 61 SRARRAHEAKQK 72
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/72 (58%), Positives = 56/72 (77%)
Frame = +2
Query: 23 MSSLELQKRLAASVMRCGKQKVWLDPNEIHEIANTSSRQNIRKMIKDGLVIKKPVAVHSL 202
M SL+LQKRLA+SV++CGK KVWLDPNE++EI+ +SRQNIRK++KDG +IKKP +HS
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 203 CSCSQKHRGAQE 238
+ H Q+
Sbjct: 61 SRARRAHEAKQK 72
>02_05_1050 -
33757432-33757664,33757767-33758645,33758720-33759109,
33759488-33759613,33760497-33760557
Length = 562
Score = 28.3 bits (60), Expect = 0.90
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 98 PNEIHEIANTSSRQNIRKMIKDGLVIKKPVA 190
PN H++ +++ NI+ MI ++ KPVA
Sbjct: 340 PNRTHQVNHSAGPLNIKAMINRTSLVNKPVA 370
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 47 RLAASVMRCGKQKVWLDPNEIHEIA--NTSSRQNIRKMIKDGLV 172
R A RC + LDPNEI ++ +SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>02_05_1089 +
34019162-34019164,34019249-34019465,34019558-34019714,
34019935-34020071,34020387-34020490,34020593-34020688,
34020818-34020908,34021384-34021504,34021579-34021775,
34022605-34022705,34022778-34022833,34023689-34023778,
34023865-34023964,34024194-34024295,34024372-34024441,
34024696-34024850,34024944-34025068,34025126-34025144
Length = 646
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 177 LMTRPSLIILRMFCLELVLAISWISFGSSHTFCLP 73
++++ S + + C EL+ I+ S G +HTFC P
Sbjct: 122 IVSKSSDLAITEECFELLSLIAIASDGGAHTFCEP 156
>01_06_1815 -
40064351-40064887,40064987-40065634,40065834-40065890,
40065921-40065941,40066714-40066941
Length = 496
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 189 ATGFLMTRPSLIILRMFC--LELVLAISWISFGSSHT 85
++GFL R +I + C + ++LAI+W++F S T
Sbjct: 333 SSGFLFLRCHVIAVTRMCFGILMILAIAWLAFQRSST 369
>03_02_0044 -
5245204-5245538,5245946-5246093,5246182-5247395,
5247730-5248003,5248141-5248293
Length = 707
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +2
Query: 29 SLELQKRLAASVMRCGKQKVWLDPNEIHEIANTSSRQNIRKMIKDGLVIKKPVAVHSL 202
S LQK LA +++ CG Q + + H+ A + R N+ + I L++ K +A+ +
Sbjct: 216 SANLQKDLAVTLLYCGAQVKFTQEFDQHKPA--TPRNNMEEAILLLLILTKKLALQEI 271
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 92 LDPNEIHEIANTSSRQNIRKMIKDGLVIKKPVAVHSLC 205
LDP ++E + R NI IKD L ++ +H +C
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLHYVC 665
>07_03_1439 - 26556398-26556418,26556700-26557743
Length = 354
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 20 RMSSLELQKRLAASVMRCGKQKVWLDPNEIH 112
R SL + + LAA+ +R G+ + L PN +H
Sbjct: 68 RALSLRVARALAAAGLRRGRVALLLSPNSLH 98
>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
Length = 900
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 198 EWTATGFLMTRPSLIILRMFCLELVLAISWIS 103
EWT TGF+ R L L + CLE +WI+
Sbjct: 703 EWTRTGFISPR-HLQRLYLECLEFSGLPAWIN 733
>03_05_0908 + 28686855-28687328
Length = 157
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 2 HEAHRARMSSLELQKRLAASVMRCGKQKVWLDPNEI 109
H +H AR S ELQ AA+ +K +DP I
Sbjct: 24 HSSHGARPSPRELQGWFAAAAGSSSAEKQLVDPRII 59
>10_08_0781 +
20509033-20509714,20510048-20510191,20510604-20510719,
20511356-20511520,20511822-20512043,20512613-20512735
Length = 483
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 89 WLDPNEIHEIANTSSRQNIRKMIKDGLVIKKPV 187
++D N+ + + SSR ++ ++ GL +K PV
Sbjct: 29 YVDGNDTEDCYSGSSRASLAGALRQGLNLKSPV 61
>10_07_0144 -
13367579-13368805,13369540-13369578,13369662-13369826,
13370083-13370193
Length = 513
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 228 PLCFCEHEHREWTATGFLMTRP 163
P FC+H R WTA G + P
Sbjct: 194 PRHFCKHCQRYWTAGGAMRNVP 215
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 35 ELQKRLAASVMRCGKQKVWL 94
E+++R A M+CG K+W+
Sbjct: 183 EVERRTHARKMKCGSVKMWI 202
>01_06_0770 - 31844132-31844749
Length = 205
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 228 PLCFCEHEHREWTATGFLMTRP 163
P FC+ HR WTA G L P
Sbjct: 126 PRHFCKACHRYWTAGGALRNVP 147
>01_01_0580 + 4305984-4307282,4308610-4308678
Length = 455
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 142 VLSGTSISDFMDLVWIKPHLLFT 74
VLS T IS +L W+ P+L+ T
Sbjct: 401 VLSSTKISQHGELQWLIPNLIAT 423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,613,541
Number of Sequences: 37544
Number of extensions: 131965
Number of successful extensions: 379
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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