Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P08
(254 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 91 8e-20
AL132948-28|CAD31828.1| 263|Caenorhabditis elegans Hypothetical... 27 1.4
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 27 1.4
Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical pr... 27 1.8
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical... 27 1.8
AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical ... 27 2.4
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z27079-7|CAA81592.1| 293|Caenorhabditis elegans Hypothetical pr... 26 4.3
Z78059-3|CAB01486.3| 345|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z73974-2|CAA98271.2| 713|Caenorhabditis elegans Hypothetical pr... 25 9.8
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 25 9.8
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 25 9.8
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 25 9.8
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 25 9.8
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 25 9.8
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 25 9.8
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 25 9.8
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 25 9.8
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 25 9.8
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 91.5 bits (217), Expect = 8e-20
Identities = 37/59 (62%), Positives = 52/59 (88%)
Frame = +2
Query: 23 MSSLELQKRLAASVMRCGKQKVWLDPNEIHEIANTSSRQNIRKMIKDGLVIKKPVAVHS 199
MS+L LQKRLA++V++CGK +VWLDPNE+ EI+ +SRQ+IR+++ DGL+I+KPV VHS
Sbjct: 1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHS 59
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 207 RVRKNTEARRKGRHCG 254
R R+ EARRKGRH G
Sbjct: 62 RAREYEEARRKGRHTG 77
>AL132948-28|CAD31828.1| 263|Caenorhabditis elegans Hypothetical
protein Y39B6A.36 protein.
Length = 263
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 110 HEIANTSSRQNIRKMIKDGLVIKKPVAVHS--LCSCSQKHRGAQ 235
H + NT ++ + KMI+ V KPV+VH+ + QK GA+
Sbjct: 146 HIVKNTQPKKTV-KMIEKAAVKFKPVSVHAEDMIKSKQKKDGAK 188
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 219 FCEHEHREWTATGFLMTRPSLIILRMFCLELVLAISWISF 100
FC + T F+ PSL +L + L+L L + ++ F
Sbjct: 276 FCYSDDENLFGTRFVFAVPSLTVLPLLILQLPLLLHFVKF 315
>Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical
protein F20E11.7 protein.
Length = 357
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 47 RLAASVMRCGKQKVWLDPNEI 109
++A + + CG K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191
>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
protein Y48G9A.1 protein.
Length = 1725
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +2
Query: 92 LDPNEIHEIANTSS--RQNIRKMIKDGL--VIKKPVAVHSLCS 208
L P + H +A RQN R M+ L + K PV VH+LCS
Sbjct: 1116 LTPEQDHILAGLCDVMRQNSRSMLPYLLPKLTKPPVNVHALCS 1158
>AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical
protein Y68A4A.5 protein.
Length = 572
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 41 QKRLAASVMRCGKQKVWLDPNEI 109
Q ++A + + CG +W DPN I
Sbjct: 321 QAQIAETSVTCGSDAIWQDPNGI 343
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 44 KRLAASVMRCGKQKVWLDPNEI 109
+++A + + CG K+W D N I
Sbjct: 536 RQIAETSITCGADKIWQDANGI 557
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
protein C05C9.3 protein.
Length = 1225
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 125 TSSRQNIRKMIKDGLVIKKPVAVHSLCSCSQ 217
T +NI K+I +G + K P++++ + SC +
Sbjct: 477 TPGSENIGKVIDEGDLHKSPLSLNEVLSCDE 507
>Z27079-7|CAA81592.1| 293|Caenorhabditis elegans Hypothetical
protein T05G5.7 protein.
Length = 293
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 35 ELQKRLAASVMRCGKQKVWLDPNEIHEIANTSSRQNIRKMIKDG 166
EL+KR M C +W HE++ T S + RKM+ +G
Sbjct: 89 ELKKRREDGEMTC--DLLWRMCRFCHELSTTMSGEQRRKMLIEG 130
>Z78059-3|CAB01486.3| 345|Caenorhabditis elegans Hypothetical
protein C34B4.2a protein.
Length = 345
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 198 PCARVRKNTEARRKGRHC 251
P A VRKN RR+ R C
Sbjct: 107 PAATVRKNVVVRRRPREC 124
>Z73974-2|CAA98271.2| 713|Caenorhabditis elegans Hypothetical
protein F29F11.4 protein.
Length = 713
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -2
Query: 235 LRASVFLRTRAQGMDSNWFLDDQTILDHLTDVLSGT 128
LR LR R W LD+ + DH+ D+ T
Sbjct: 75 LRNDSALRFRRAAEAVEWLLDELNLSDHIRDLSEET 110
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 DDQGWSGHQETSCCPFPVL 207
DD S H ET+CC P+L
Sbjct: 1658 DDCDSSDHCETNCCVDPIL 1676
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 DDQGWSGHQETSCCPFPVL 207
DD S H ET+CC P+L
Sbjct: 1643 DDCDSSDHCETNCCVDPIL 1661
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 DDQGWSGHQETSCCPFPVL 207
DD S H ET+CC P+L
Sbjct: 1691 DDCDSSDHCETNCCVDPIL 1709
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 DDQGWSGHQETSCCPFPVL 207
DD S H ET+CC P+L
Sbjct: 1650 DDCDSSDHCETNCCVDPIL 1668
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 DDQGWSGHQETSCCPFPVL 207
DD S H ET+CC P+L
Sbjct: 1650 DDCDSSDHCETNCCVDPIL 1668
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 DDQGWSGHQETSCCPFPVL 207
DD S H ET+CC P+L
Sbjct: 1658 DDCDSSDHCETNCCVDPIL 1676
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 DDQGWSGHQETSCCPFPVL 207
DD S H ET+CC P+L
Sbjct: 1691 DDCDSSDHCETNCCVDPIL 1709
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 DDQGWSGHQETSCCPFPVL 207
DD S H ET+CC P+L
Sbjct: 1643 DDCDSSDHCETNCCVDPIL 1661
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent
calcium channelalpha13 subunit protein.
Length = 1837
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 DDQGWSGHQETSCCPFPVL 207
DD S H ET+CC P+L
Sbjct: 1643 DDCDSSDHCETNCCVDPIL 1661
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,203,739
Number of Sequences: 27780
Number of extensions: 107102
Number of successful extensions: 347
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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