Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P07
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 30 1.7
08_02_1465 - 27319377-27319405,27319936-27320101,27320336-273204... 29 2.2
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 29 2.2
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 28 5.1
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 28 5.1
01_06_0954 - 33322951-33323606,33324213-33325014 28 5.1
08_02_0839 + 21693348-21694853 28 6.7
06_01_0854 - 6490425-6491639 27 8.9
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 574 SLTNKSEERIGHIPRCRVTTLLQTVDHTSCQLIVFAALFGGRKAVS--GFSVREAVFQLS 401
SL + R+G + CRV L+ + + CQ F + + ++ GF VR QLS
Sbjct: 397 SLIEPNNNRLGEVVSCRVHDLMLDIILSKCQQENFITVATKQSILNDRGFPVRRLCCQLS 456
Query: 400 ETSLD 386
+L+
Sbjct: 457 YENLE 461
>08_02_1465 -
27319377-27319405,27319936-27320101,27320336-27320444,
27320865-27321448
Length = 295
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 551 ENRPYSPVSGYYTAPDC*PHKLSTHRICRTF 459
+ R ++P+ GY C PHKL + IC F
Sbjct: 117 DTRQWAPLPGYPPPHPCYPHKLFSPTICLVF 147
>07_03_0918 -
22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 29.5 bits (63), Expect = 2.2
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
Frame = +2
Query: 44 VATVDAAGRAFVECVKELVDVNQLKNEIEEAKPNGALDEVFKKYCAKSPQL--NSCINSL 217
V ++ +G F ++E + +L E + K + +++ ++YCA +P L N+ +
Sbjct: 589 VDSMKFSGLKFDAAIREFLKGFRLPGEAQ--KIDRIMEKFAERYCADNPGLFKNADTAYV 646
Query: 218 LDGVSPCVDPNARGHLASVKNSTNQLVDFICYKDGDRIALFIAESGPECLQEKADSIKTC 397
L ++ +A + K S + V D + A E L+E DSI
Sbjct: 647 LAYAVIMLNTDAHNPMVWPKMSKSDFVRMNTASDAEECA------PKELLEEIYDSIVQE 700
Query: 398 FTKLKDSFPNAEAAN 442
K+KD FP++ N
Sbjct: 701 EIKMKDDFPDSAKTN 715
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 210 IHFWTVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETESL 335
+HFW + + T+A + L S VP S T YA + T +L
Sbjct: 709 LHFWVILFASLITTNAYVMLVSALVP-SYITGYAVVIATTAL 749
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 497 VNSLEQCSNPTPGNMADSLFRFIRKGLPCPK 589
V++L QC+ + G M D L F+ LP PK
Sbjct: 57 VDALNQCNAISEGIMTDELRSFLELNLPKPK 87
>01_06_0954 - 33322951-33323606,33324213-33325014
Length = 485
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +2
Query: 203 CINSLLDGVSPCVDPNARGHLASVKNSTNQLVDFICYKDGDRI-ALFIAESGPECLQEKA 379
C SLL S CV + V N+ L F Y++ ++ A + + P CL +
Sbjct: 285 CRTSLLKSESSCVRIE---RVFKVHNTQRTLARFEEYREAVKLKASKLPKKHPRCLADGN 341
Query: 380 DSIKTCFTKLKDSFPNAEAANSLSTAEKC 466
+ ++ L + A ++SL ++KC
Sbjct: 342 ELLRFHGATLSCALGGAAGSSSLCASDKC 370
>08_02_0839 + 21693348-21694853
Length = 501
Score = 27.9 bits (59), Expect = 6.7
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Frame = +2
Query: 236 CVDPNARGHLASVKNSTNQLVDFICYKDGDRIALFIAESGPE-CLQEKADSIKTCFTKLK 412
C+D H + L DF Y G LF+ ESG E + ++ D+ + L
Sbjct: 180 CIDTWLLSHSTCPLCRRSLLADFSPYGGGCSPLLFVLESGSEGSISDRLDAASSAHLSLV 239
Query: 413 DSFPNAEAANSLSTAEKCGKYDELTTCV 496
EA AE K DE+ V
Sbjct: 240 ME-QEEEAEPEQKHAEAAEKADEVVVSV 266
>06_01_0854 - 6490425-6491639
Length = 404
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -1
Query: 535 PRCRVTTLLQTVDHTSCQLIVFAALFGGRKAVSGFSVREAVFQLSETSLD*ISLLLQALR 356
PR +TLL H L F+A K+ F+V E + + D + +++
Sbjct: 15 PRATASTLLSLRHHGLFSLTRFSAAAAAAKSAGHFAVEEYLVATCHLTPDQATKASKSIS 74
Query: 355 TALSDEQSDSVSIFVA 308
S + D+V F+A
Sbjct: 75 HLKSPSRPDAVVAFLA 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,973,421
Number of Sequences: 37544
Number of extensions: 283330
Number of successful extensions: 931
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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