Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P07
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    32   0.37 
AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    29   2.6  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   3.5  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      29   3.5  
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type tra...    27   8.0  
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    27   8.0  

>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +3

Query: 258 AISLQSRTVPTSSSTSYATKMETESLCSSLRAVLSACKRRLIQSRLVSLS*KTASLTLKP 437
           A+S  +  +P ++ ++      T+ L +S  A +S+  R +  SR +     TAS T++P
Sbjct: 76  ALSSSTTNIPMTTFSTNEASSSTKLLSTSSTAEISSTTRTV--SRSIKPETSTASTTIRP 133

Query: 438 LTAFLPPKSAAN 473
           LT    P  + N
Sbjct: 134 LTTTTTPAPSNN 145


>AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical
           protein Y19D10A.10 protein.
          Length = 703

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -2

Query: 549 ESAIFPGVGLLHCSRLL-TTQVVNSSYLPHFSAVERLLAASALGKLSFSLVKQVLIESAF 373
           +S +F G  +     L+ +  ++NS  L +F  +  L+  SALG L F L   +   S+F
Sbjct: 80  KSLLFSGAAIGGLIGLIPSVPLINSIGLRNFQTISGLI--SALGALLFPLAVSIDFYSSF 137

Query: 372 SCRHSGPLSAMNKAILSPSL 313
            CR    L  M  +I+  S+
Sbjct: 138 LCR---VLQGMGSSIIFTSV 154


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -2

Query: 549 ESAIFPGVGLLHCSRLL-TTQVVNSSYLPHFSAVERLLAASALGKLSFSLVKQVLIESAF 373
           +S +F G  +     L+ +  ++NS  L +F  +  L+  SALG L F L   +   S+F
Sbjct: 123 KSLLFSGAAIGGLIGLIPSVPLINSIGLRNFQTISGLI--SALGALLFPLAVSIDFYSSF 180

Query: 372 SCRHSGPLSAMNKAILSPSL 313
            CR    L  M  +I+  S+
Sbjct: 181 LCR---VLQGMGSSIIFTSV 197


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 254 RGHLASVKNSTNQLVDFICYKDGDRIALFIAESG 355
           +G++    N T +L+D    K+GD +A+ +A +G
Sbjct: 64  KGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 254 RGHLASVKNSTNQLVDFICYKDGDRIALFIAESG 355
           +G++    N T +L+D    K+GD +A+ +A +G
Sbjct: 64  KGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 254 RGHLASVKNSTNQLVDFICYKDGDRIALFIAESG 355
           +G++    N T +L+D    K+GD +A+ +A +G
Sbjct: 64  KGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = +2

Query: 254 RGHLASVKNSTNQLVDFICYKDGDRIALFIAESGPECLQEKADSIKTCFTKLKDSFP-NA 430
           RGH     N  +QL    CY +    A +  +   E +Q+  D     F K+    P + 
Sbjct: 560 RGHPKLAMNFLDQLTKNPCYNNEASGAYWYLKGSLEMMQKHDDLAMEAFNKVLILQPDHI 619

Query: 431 EAANSLST-AEKCGKYDELTTCVVN-SLEQCSN 523
           +    LST  +K G +++    + N  LE CS+
Sbjct: 620 DNRIHLSTLQQKSGFFEKALETLENYDLENCSS 652


>Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical
           protein T24D3.1 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 207 SIHFWTVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETESLCSSLR 350
           S HF T +H +   T  + S QS T P++S    + +    S+  ++R
Sbjct: 77  SSHFTTFTHFSTPSTSPSTSTQSSTTPSNSDNKKSFQCSNCSVTETIR 124


>AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 207 SIHFWTVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETESLCSSLR 350
           S HF T +H +   T  + S QS T P++S    + +    S+  ++R
Sbjct: 77  SSHFTTFTHFSTPSTSPSTSTQSSTTPSNSDNKKSFQCSNCSVTETIR 124


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 576 SPLRINLKRESAIFPGVGLLHCSRLL 499
           SP++IN   E +IFPG   +H   ++
Sbjct: 478 SPIQINKSTEKSIFPGKNAIHYGEVI 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,697,820
Number of Sequences: 27780
Number of extensions: 245341
Number of successful extensions: 905
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)