Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P06
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44...    29   2.7  
03_05_0252 - 22403504-22404676                                         28   6.1  
01_01_1122 + 8899946-8900043,8900191-8900291,8900416-8900945           28   6.1  
03_06_0388 + 33564096-33564485,33564642-33564812,33565125-335651...    27   8.1  
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886...    27   8.1  

>01_01_0058 +
           440328-440437,440514-440733,441605-441805,441915-441985,
           442058-442217,444166-444492,444529-444759,444869-445249,
           445573-445648,445736-445799,446334-446469,447666-447710,
           447851-447916
          Length = 695

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 306 SWAPFLSISFTHTSPLSGHGLPRYPIPRQL 217
           SW  F SIS+TH     G    RYP PR++
Sbjct: 176 SWVKFSSISWTHDG--KGFFYGRYPAPREV 203


>03_05_0252 - 22403504-22404676
          Length = 390

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 372 YVSAGMSVRNALKLLKQSRVITSWAPFLSISFTHTSPLSGHGLPRYPIPR 223
           Y  AG +  +A + L  S V+   A F+  S    SP +G  LPR+P+ R
Sbjct: 118 YGFAGAASVSA-RCLANSAVVKDMAVFVGAS--KESPFAGRPLPRFPVQR 164


>01_01_1122 + 8899946-8900043,8900191-8900291,8900416-8900945
          Length = 242

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 440 LDIKRDWYDETTW-CFCFLDHRCNGASSTFTHISFVTISCSLIYIFF 577
           LD+  D     TW  FCF+DH C  A S    I F+ +S  ++ + +
Sbjct: 28  LDVSCDGVCAGTWDAFCFIDHLC--ALSLGKLILFLVLSYLMLLVMW 72


>03_06_0388 +
           33564096-33564485,33564642-33564812,33565125-33565145,
           33565260-33565467,33566156-33566346,33566465-33566584,
           33566703-33566936
          Length = 444

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 368 TYEGCRSAAKDLNLANYVNNSIKE-LDIKRDWYDETTWCFCFLDHRCNGASSTFTHISFV 544
           T++G    AKD+   N V NS+K  + I +++ D    C          ++  F +I+  
Sbjct: 325 TWQGGSGYAKDIVFQNMVMNSVKNPIIIDQNYCDSAKKCETQEGSAVEISNVVFKNIAGT 384

Query: 545 TISCSLI 565
           TIS S I
Sbjct: 385 TISKSAI 391


>03_02_0493 -
           8866685-8866888,8866989-8867059,8867143-8867416,
           8867666-8868036,8868127-8868482,8868558-8868630,
           8869307-8869412,8869667-8869760,8870616-8870680,
           8871655-8871927
          Length = 628

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -2

Query: 384 RHPSYVSAGMSVRNALKLLKQSRVITSWAPFLSISFTHTSPLSGH--GLPRYPIPRQLNG 211
           RHP+ ++   S+RN L +      +   A F    F   S L+    G P Y  P  +  
Sbjct: 79  RHPNVIALHESIRNILLVANNENSLLKIADFGFAKFLEPSSLAETLCGSPLYMAPEVMQA 138

Query: 210 SKH 202
            K+
Sbjct: 139 QKY 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,819,274
Number of Sequences: 37544
Number of extensions: 326927
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)