Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P06
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9411| Best HMM Match : Exo_endo_phos (HMM E-Value=0.19)             33   0.13 
SB_19799| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_16808| Best HMM Match : DUF1454 (HMM E-Value=1.7)                   29   2.1  
SB_31786| Best HMM Match : Hexapep (HMM E-Value=0.00028)               28   4.8  
SB_47214| Best HMM Match : CAT_RBD (HMM E-Value=1.5)                   28   6.3  
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   8.3  
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)                   27   8.3  

>SB_9411| Best HMM Match : Exo_endo_phos (HMM E-Value=0.19)
          Length = 891

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +2

Query: 278 KLIERKGAQEVITRDCLSNFRAFRTDIPADTYEGCRSAAKDLNLANYVNNSIKELDIKRD 457
           K+I+ +G   + T   L N R     +  D  E   SA ++  L  Y NN IKE  + + 
Sbjct: 689 KVIDSRGRNLIETCTAL-NMRILNGRVVGDLEETLLSACENAGL-RYQNNDIKESSVNKM 746

Query: 458 WYDE 469
           W+D+
Sbjct: 747 WFDK 750


>SB_19799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 389 AAKDLNLANYVNNSIKELDIKRDWYDETTWCFCFLDH 499
           AA+ L + N+  NS   L  KR    ET + FC  DH
Sbjct: 11  AARLLEIRNFGRNSPLALKAKRRLLFETIYVFCLADH 47


>SB_16808| Best HMM Match : DUF1454 (HMM E-Value=1.7)
          Length = 364

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = +2

Query: 287 ERKGAQEVITRDCLSNFRAFRTDIPADTYEGCRSAAKDLNLANYVNNSIKELDIKRDWYD 466
           +   A E +  D  +N     T +          A + L   NY + S   +DI +  + 
Sbjct: 88  QNAAAMEYLHIDVWTNANPMNTVLQVSPINNGTGAGEFLVTINYTSGSWYSVDIPKSAFT 147

Query: 467 ETTWCFCF-LDHRCNGASST 523
             TW   F L    NGA ST
Sbjct: 148 GMTWDAVFQLKFAANGAGST 167


>SB_31786| Best HMM Match : Hexapep (HMM E-Value=0.00028)
          Length = 348

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 366 SAGMSVRNALKLLKQSRVIT-SWAPFLSISFTHTSPLSGHGLPRYPI 229
           S GM  R+  +LL  +++I  S  PFL  + TH +PL G      P+
Sbjct: 93  STGMCYRD--QLLASAKIIQDSGLPFLCSNITHIAPLDGSASALSPV 137


>SB_47214| Best HMM Match : CAT_RBD (HMM E-Value=1.5)
          Length = 238

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 353 DIPADTY-EGCRSAAKDLNLANYVNNSIKELDIKRDWYDE 469
           D   D + E   SA K+  L  Y NN IKE  + + W+D+
Sbjct: 156 DTSVDPFTETLLSACKNAGL-RYQNNDIKESSVNKMWFDK 194


>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 396 LAADRHPSYVSAGMSVRNALKLLKQS 319
           +A +  PS++S G+S+RN +KL + S
Sbjct: 325 VAMETEPSHLSMGVSIRNLVKLSRVS 350


>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 544

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 369 VSAGMSVRNALKLLKQSRVITSWAPFLSISFTHTSPLSGHGL 244
           ++ G+SV N L     SR+  + +   S+SFTH   L  H L
Sbjct: 192 IATGVSVCNRLSARHNSRLRLAMSQKPSVSFTHRRQLRCHRL 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,866,879
Number of Sequences: 59808
Number of extensions: 402387
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)