Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P06
         (577 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124693-1|BAC85927.1|  206|Homo sapiens protein ( Homo sapiens ...    38   0.019
X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane h...    29   8.9  
M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteogly...    29   8.9  
AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteog...    29   8.9  
AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteog...    29   8.9  
AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteog...    29   8.9  

>AK124693-1|BAC85927.1|  206|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42703 fis, clone BRAMY3005932, moderately
           similar to Diacylglycerol kinase, zeta (EC 2.7.1.107).
           ).
          Length = 206

 Score = 38.3 bits (85), Expect = 0.019
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +2

Query: 227 GMGYLGNPCPDSGDVCVKLIERKGAQEVITRDCLSNFRAFRTDIPADTYEGCRSAAKDLN 406
           GMGY  +PC  SG+ C+      G + +      +     +TD   DT       A+D  
Sbjct: 124 GMGYTASPCSPSGETCLHQAAALGQRTICHYIVEAGASLMKTDQQGDTPRQRAEKAQDTE 183

Query: 407 LANYVNN 427
           LA Y+ N
Sbjct: 184 LAAYLEN 190


>X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane
            heparan sulfate  proteoglycan core protein protein.
          Length = 4393

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 146  MFSK---SLAIWCYQCTAATPGCLEPF-NWRGMGYLGNPCPDSG 265
            MFS+   SL    Y+CTA  PG    +    G GY+GNP    G
Sbjct: 1625 MFSRTCESLGAGGYRCTACEPGYTGQYCEQCGPGYVGNPSVQGG 1668


>M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteoglycan
            protein.
          Length = 4391

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 146  MFSK---SLAIWCYQCTAATPGCLEPF-NWRGMGYLGNPCPDSG 265
            MFS+   SL    Y+CTA  PG    +    G GY+GNP    G
Sbjct: 1623 MFSRTCESLGAGGYRCTACEPGYTGQYCEQCGPGYVGNPSVQGG 1666


>AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteoglycan
            2 protein.
          Length = 4391

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 146  MFSK---SLAIWCYQCTAATPGCLEPF-NWRGMGYLGNPCPDSG 265
            MFS+   SL    Y+CTA  PG    +    G GY+GNP    G
Sbjct: 1623 MFSRTCESLGAGGYRCTACEPGYTGQYCEQCGPGYVGNPSVQGG 1666


>AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteoglycan
            2 protein.
          Length = 4391

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 146  MFSK---SLAIWCYQCTAATPGCLEPF-NWRGMGYLGNPCPDSG 265
            MFS+   SL    Y+CTA  PG    +    G GY+GNP    G
Sbjct: 1623 MFSRTCESLGAGGYRCTACEPGYTGQYCEQCGPGYVGNPSVQGG 1666


>AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteoglycan
            perlecan protein.
          Length = 4370

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 146  MFSK---SLAIWCYQCTAATPGCLEPF-NWRGMGYLGNPCPDSG 265
            MFS+   SL    Y+CTA  PG    +    G GY+GNP    G
Sbjct: 1602 MFSRTCESLGAGGYRCTACEPGYTGQYCEQCGPGYVGNPSVQGG 1645


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,128,412
Number of Sequences: 237096
Number of extensions: 2001222
Number of successful extensions: 2947
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2947
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)