Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P06
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   6.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   6.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   6.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   6.6  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   6.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   6.6  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   6.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 110 MKLLSIFITFMLMFSKSLAIWCYQCTA 190
           + LL I  TF+ +    L IW + C A
Sbjct: 51  LALLYILFTFLALLGNGLVIWIF-CAA 76


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
 Frame = -1

Query: 289 FYQFYTYIPT----VWAWVT 242
           +Y F+TYIPT    + +WV+
Sbjct: 246 YYLFHTYIPTCLIVIMSWVS 265


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 386 SAAKDLNLANYVNNSIKEL 442
           S + + N +NY NN+ K+L
Sbjct: 84  SLSNNYNYSNYNNNNYKQL 102


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 386 SAAKDLNLANYVNNSIKEL 442
           S + + N +NY NN+ K+L
Sbjct: 84  SLSNNYNYSNYNNNNYKQL 102


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 386 SAAKDLNLANYVNNSIKEL 442
           S + + N +NY NN+ K+L
Sbjct: 84  SLSNNYNYSNYNNNNYKQL 102


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 386 SAAKDLNLANYVNNSIKEL 442
           S + + N +NY NN+ K+L
Sbjct: 84  SLSNNYNYSNYNNNNYKQL 102


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 386 SAAKDLNLANYVNNSIKEL 442
           S + + N +NY NN+ K+L
Sbjct: 84  SLSNNYNYSNYNNNNYKQL 102


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 386 SAAKDLNLANYVNNSIKEL 442
           S + + N +NY NN+ K+L
Sbjct: 84  SLSNNYNYSNYNNNNYKQL 102


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 37  NKHYKPLYVLLITI 78
           N +YKPLY  +I I
Sbjct: 328 NNNYKPLYYNIINI 341


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = +2

Query: 218 NWRGMGYLGNP-CPD 259
           NW+ M YLG P  PD
Sbjct: 315 NWKMMMYLGTPVMPD 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,460
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)