Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P05
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   4.2  
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    25   4.2  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    25   5.5  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +1

Query: 148 DYTSYSPVSSSEIRPIFLPIKYKTRLDYDST----FCFCSSD 261
           +YTS S   S E    FL    K RLD DS       FCS+D
Sbjct: 374 EYTSGSDKMSLEQFRHFLSTSQKARLDSDSIRTLYVSFCSND 415


>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 345 RLVFFFYKLIIIEIRSLQKLEIMSYHRQI 259
           R++FFFY L+I E +S Q +   ++  QI
Sbjct: 190 RVIFFFYALLIQEDKSKQIILQKAHEFQI 218


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 301 EPSEIRNNVLPSTNLTNKNKT*SHSQALFYILLEEKSVEFRRRRQGNTKCN 149
           EP    ++   STNL N N   S +Q  F I   + S +F  R +G  +C+
Sbjct: 117 EPKHHDSSNKESTNLDNSNMDESENQKNFKIEEPKPSGDF--RNEGPKQCD 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,416
Number of Sequences: 5004
Number of extensions: 29550
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)