Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P05
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0321 - 14355058-14355681                                         27   7.1  
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206...    27   7.1  
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773...    26   9.4  
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29...    26   9.4  
09_06_0319 - 22293869-22293906,22294539-22295808                       26   9.4  
09_03_0114 + 12467206-12467493                                         26   9.4  
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890     26   9.4  

>06_02_0321 - 14355058-14355681
          Length = 207

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 157 SYSPVSSSEIRPIFLPIKYKTRLD 228
           SY+P  SSE  P F P++ ++ LD
Sbjct: 43  SYAPPESSEPAPAFSPLELRSLLD 66


>05_06_0116 -
           25719030-25719458,25720138-25720301,25720390-25720643,
           25720727-25720782,25721032-25721169,25721315-25721421,
           25721502-25721681,25721757-25721852,25721926-25722007,
           25722084-25722425,25722666-25722695,25722788-25722880,
           25722963-25723040,25723122-25723222,25723833-25724058,
           25724647-25724760,25724855-25725009,25725515-25725554
          Length = 894

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 278 CLTIDKSDEQKQNVES*SSLVLYFIGRKIGRISEEETGEY 159
           CL +D SD++ + + S  +++ + +   I  + EE  G Y
Sbjct: 32  CLPLDSSDDELRELLSDGTVLCHIVNALIPGVLEESWGAY 71


>12_01_0833 -
           7730761-7731030,7731171-7731425,7731565-7731736,
           7731873-7732106,7732362-7732495,7734116-7734199,
           7735086-7735376,7735566-7735898,7736351-7736424,
           7736558-7736653,7736876-7737029,7737118-7737221,
           7737325-7737485,7737774-7738087,7738950-7739231,
           7739909-7740210,7740513-7740713,7740924-7741014,
           7741424-7741500,7741595-7741754,7742026-7742110,
           7742194-7742288
          Length = 1322

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 321 IYRKKKLNVEAWPCFIYIISIWY 389
           +Y K K N  A  C IY +S W+
Sbjct: 383 LYEKSKANKNALSCSIYSLSKWH 405


>11_01_0039 -
           290960-291086,291615-291714,291809-292013,292466-292513,
           295071-295646,295828-296260,296470-297338,297433-298227,
           298709-298753,299135-299352,300055-300364,302715-302984
          Length = 1331

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 199 EKSVEFRRRRQGNTKCNRLFCICIMRP 119
           E+  E R RR+    C  +FC C + P
Sbjct: 67  EEEGEERERREERIICGAIFCFCHLSP 93


>09_06_0319 - 22293869-22293906,22294539-22295808
          Length = 435

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 125 HYTYAKETITLRIPLSPPPKFDRF 196
           ++ Y   T T ++ L PPP  DRF
Sbjct: 119 YFVYQATTPTPKLTLLPPPPIDRF 142


>09_03_0114 + 12467206-12467493
          Length = 95

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 120 GRIIHMQKRRLHFVFPCL 173
           GRIIH +K R+ + +PC+
Sbjct: 78  GRIIHGRKLRVDWAYPCI 95


>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
          Length = 216

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 120 GRIIHMQKRRLHFVFPCL 173
           GRIIH +K R+ + +PC+
Sbjct: 199 GRIIHGRKLRVDWAYPCI 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,272,599
Number of Sequences: 37544
Number of extensions: 167539
Number of successful extensions: 401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)