Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P05
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016451-2|AAB65997.2|  290|Caenorhabditis elegans Serpentine re...    28   2.1  
U41510-5|AAK39384.3|  453|Caenorhabditis elegans Hypothetical pr...    28   2.7  

>AF016451-2|AAB65997.2|  290|Caenorhabditis elegans Serpentine
           receptor, class x protein39 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 127 LYICKRDDYTSYSPVSSSEIRPIFLPIKYKTRLDYDSTFCFC----SSDLSMVRHYF*FL 294
           L IC     T +  +S + I  ++ P+ Y+       TFC      S  L+++  +F  L
Sbjct: 83  LMICYSASTTFHFMISLNRILAVYKPMLYRMMFSVLFTFCIVMGIYSYALTIITLFFQIL 142

Query: 295 KAPNFYN 315
              NFY+
Sbjct: 143 GCQNFYD 149


>U41510-5|AAK39384.3|  453|Caenorhabditis elegans Hypothetical
           protein ZC449.2 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 130 YICKRDDYTSYSPVSSSEIRPIFLPIKYKTRLDYDSTFCFCSSDLSMV 273
           Y C+RD+  SY  V  S +    LP +    +D  S   +CS +++ +
Sbjct: 216 YKCQRDETLSYFLVYGSRLSTKMLPQRL-NGVDQSSCLMYCSQNINAI 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,483,669
Number of Sequences: 27780
Number of extensions: 162730
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)