Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P04
         (378 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5UZ15 Cluster: Cation efflux protein; n=1; Haloarcula ...    34   1.0  
UniRef50_A0CZN3 Cluster: Chromosome undetermined scaffold_32, wh...    31   7.1  
UniRef50_Q9I2D0 Cluster: Putative uncharacterized protein; n=7; ...    31   9.4  
UniRef50_O66823 Cluster: Succinyl-diaminopimelate desuccinylase;...    31   9.4  

>UniRef50_Q5UZ15 Cluster: Cation efflux protein; n=1; Haloarcula
           marismortui|Rep: Cation efflux protein - Haloarcula
           marismortui (Halobacterium marismortui)
          Length = 323

 Score = 33.9 bits (74), Expect = 1.0
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 60  QFFSFRLLSSVCLLPSGIPSVNSSRTQCFILIGV*FLYFNFERRTDFTSRRGR--YKF*K 233
           +FF F L  S  +L     S++ +  Q F+LIG+ F     +RR  F   + +  Y F  
Sbjct: 22  KFFGFLLTGSAAMLSETYHSISDTGNQVFLLIGIRFSERERDRRHPFGYGKAQFFYSFLV 81

Query: 234 RLFKSSISTW 263
            +F   I+ W
Sbjct: 82  SVFLFGIAGW 91


>UniRef50_A0CZN3 Cluster: Chromosome undetermined scaffold_32, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_32,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 308

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 141 TAFEKNLRKVCRKVINKHCLEGGMKKTADVVSYPSYTRPPSCRIP 7
           ++F + L+K  RK   +  L   + K   +V Y +  RPP+C+ P
Sbjct: 144 SSFAELLKKNQRKSTKRPSLARKLSKQMSLVEYDNMERPPTCKTP 188


>UniRef50_Q9I2D0 Cluster: Putative uncharacterized protein; n=7;
           Gammaproteobacteria|Rep: Putative uncharacterized
           protein - Pseudomonas aeruginosa
          Length = 387

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 252 ISTWLIFYIF*THQIIKMVKKMSEESVDSGVGR 350
           ++TWL F +F TH ++   +K+     DSG  R
Sbjct: 195 VNTWLDFEVFTTHHVVPRAEKLVVTRADSGSRR 227


>UniRef50_O66823 Cluster: Succinyl-diaminopimelate desuccinylase;
           n=1; Aquifex aeolicus|Rep: Succinyl-diaminopimelate
           desuccinylase - Aquifex aeolicus
          Length = 299

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = -1

Query: 195 QYGVQN*SIKIKRQLK*NTAFEK--NLRKVCRKVINKHCLEGGMKKTADVVSYPS----Y 34
           QYG    S+KIK +    + FEK  N  KV  K++NK  LE  +K+  +V+   S    Y
Sbjct: 165 QYGAYEFSVKIKCKSAHGSEFEKVENPVKVFIKLLNK--LEEVLKREVNVIMVRSGTKVY 222

Query: 33  TRPPSC 16
           T P +C
Sbjct: 223 TVPKTC 228


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 306,145,757
Number of Sequences: 1657284
Number of extensions: 4775253
Number of successful extensions: 10129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10128
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)