Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P04
         (378 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.44 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   2.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   7.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   7.2  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    20   9.5  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 89  CLFITFRHTFRKFFSNAVFYFNWRLIFIL 175
           C FI F  T    F  A  +FN  L+F+L
Sbjct: 171 CAFIIF--TMHLLFCCAFIFFNMHLLFLL 197


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 144 NTAFEKNLRKVCRKVINKHCLEGGMKKTA 58
           N   +K  R  C+    + CL  GMK+ A
Sbjct: 127 NCIIDKRQRNRCQYCRYQKCLNMGMKREA 155


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 144 NTAFEKNLRKVCRKVINKHCLEGGMK 67
           N   +  +R+ C++   K CL  GM+
Sbjct: 229 NCEIDMYMRRKCQECRLKKCLSVGMR 254


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 132 EKNLRKVCRKVINKHCLEGGMKKTA 58
           +K  R  CR    K C   GM K A
Sbjct: 85  DKTHRNQCRACRLKKCQNVGMNKDA 109


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 132 EKNLRKVCRKVINKHCLEGGMKKTA 58
           +K  R  CR    K C   GM K A
Sbjct: 85  DKTHRNQCRACRLKKCQNVGMNKDA 109


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -3

Query: 208 LDVKSVRRSKL 176
           LD+KS+R+S+L
Sbjct: 227 LDLKSIRKSEL 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,808
Number of Sequences: 336
Number of extensions: 1266
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)