Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P04
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   0.74 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   3.9  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   3.9  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    24   9.1  

>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 196 SVRRSKLKYKN*TPIKIKHCVREEFTEGMPEGNKQTLLRRRNEKN 62
           ++ RS  K K  +  +  H   E+ T+GMP  N+Q     R  KN
Sbjct: 35  NIPRSSAKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKN 79


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 11  IRHEGG--RV*DG*LTTSAVFFIPPSKQCLFITFRHTFRKFFSNA 139
           ++HEGG   + +G L  + +  +P    C F TF    +KFFSNA
Sbjct: 180 VQHEGGYPALYNG-LPATLLNVVPYVSICFF-TFEFCKQKFFSNA 222


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 131 SNAVFYFNWRLIFIL*F*TPY 193
           S+ +FYFNW   F++ F  PY
Sbjct: 244 SSKIFYFNWLGFFVV-FWNPY 263


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  CRMDS*QHQQFFSFRLLSSVCLLPSGI 113
           C+ +    ++FF+ RL +SV   P GI
Sbjct: 60  CKFNKNSFEKFFARRLSNSVAPTPGGI 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,293,638
Number of Sequences: 5004
Number of extensions: 21470
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)