Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P04
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    28   2.1  
03_02_0191 - 6270591-6271364,6271458-6272168                           27   3.7  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    27   6.5  
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475...    26   8.6  
01_01_0384 - 2970369-2970726,2970812-2970882,2971428-2971509,297...    26   8.6  

>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 105 KVINKHCLEGGMKKTADVVSYPSYTRPPS 19
           ++I +HC  G + + A+ +S PS+  PP+
Sbjct: 702 EMIMQHCGPGNVSRPAERISLPSWVPPPA 730


>03_02_0191 - 6270591-6271364,6271458-6272168
          Length = 494

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 54  VVSYPSYTRPPSCRIPAA 1
           +V Y  Y  PPSCR+P A
Sbjct: 89  LVDYSCYKPPPSCRVPFA 106


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 117 KVCRKVINKHCLEGGMKKTADVVSYPSYTRPPSCR 13
           + CR VI K C  GG+KK  +V  Y   T    C+
Sbjct: 385 ETCRLVITKSCRCGGLKK--EVPCYQELTCERKCQ 417


>03_06_0372 +
           33446153-33446665,33446744-33446993,33447347-33447501,
           33447593-33447805,33447926-33448113,33448282-33448540
          Length = 525

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 68  FIPPSKQCLFITFRHTFRKFFSNAV 142
           ++P S   L I FR+ F+K+ +N V
Sbjct: 394 YVPTSSDNLIIAFRNWFKKYCNNQV 418


>01_01_0384 -
           2970369-2970726,2970812-2970882,2971428-2971509,
           2971757-2971818,2972308-2972401,2972502-2972569,
           2972681-2972747,2972830-2972960,2973093-2973200,
           2973577-2973642,2973706-2973774,2973990-2974115,
           2974167-2974284,2974741-2974847,2975889-2976009,
           2976162-2976235,2976955-2977051,2977564-2977679,
           2978218-2978313,2978426-2978635,2979101-2979253
          Length = 797

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -3

Query: 256 DILLLKSRFQNL*RPLLDVKSVRRSKLKYK 167
           +I  L+ RF+++ RP LD++ VRR+K+  K
Sbjct: 691 EIEKLRERFESVERPTLDIE-VRRAKVPTK 719


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,130,756
Number of Sequences: 37544
Number of extensions: 123038
Number of successful extensions: 255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)