Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P04
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013)                    28   2.9  
SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          27   6.7  
SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07)         26   8.8  
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)                26   8.8  

>SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013)
          Length = 279

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 68  FIPPSKQCLFITFRHTFRKFFSNAVFYFNWRLIFIL*F*TPY*FHVEK 211
           F+P  +  +F  + H   K FSN VF F   + +++ F  P+ F V K
Sbjct: 58  FLPWLELLVFHCYPHQILKTFSNPVFDFVAAVPYLIHFPLPFFFAVYK 105


>SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 68  FIPPSKQCLFITFRHTFRKFFSNAVFYFNWRLIFIL*F*TPY*FHVEK 211
           F+P  +  +F  + H   K FSN VF F   + +++ F  P+ F V K
Sbjct: 102 FLPWLELLVFHCYPHQILKTFSNPVFDFVAAVPYLIHFPLPFFFAVYK 149


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -1

Query: 105  KVINKHCLEGGMKK 64
            ++ NKHC++GGMK+
Sbjct: 3942 ELFNKHCVDGGMKE 3955


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 162  KRQLK*NTAFEKNLRK--VCRKVINKHCLEGGMKKTADVVSY 43
            KRQL    A E+ LR   VC  VI ++ + GG++   D+ +Y
Sbjct: 1025 KRQLLGYAAMERRLRARTVCVAVIGQNDIIGGIEMILDLPAY 1066


>SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07)
          Length = 729

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 187 AVLISRREEVATSFESGFSRVVYLLG*FFIFSKRIKLSR 303
           A  ++R+E+    F+  +S +V +   FF F  R+K  R
Sbjct: 478 ATRVNRKEKTINVFDEKWSTLVQVTAYFFRFINRLKAER 516


>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
          Length = 303

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 141 TAFEKNLRKVCRKVINKHCLEGGMKKT 61
           T  + NLRK C+ + +K+ L+  +KKT
Sbjct: 86  TKRKHNLRKFCKNITDKNELKSQVKKT 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,553,053
Number of Sequences: 59808
Number of extensions: 153306
Number of successful extensions: 374
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)