Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P04
(378 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81512-4|CAB04170.1| 550|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z69904-5|CAA93778.1| 250|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z66567-8|CAA91494.1| 402|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z66561-9|CAA91462.1| 402|Caenorhabditis elegans Hypothetical pr... 27 3.4
AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical... 27 3.4
AY204185-1|AAO39189.1| 400|Caenorhabditis elegans nuclear recep... 27 4.5
AL022272-4|CAC42310.2| 391|Caenorhabditis elegans Hypothetical ... 27 4.5
Z47356-8|CAD27185.1| 477|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z47075-8|CAA87381.2| 477|Caenorhabditis elegans Hypothetical pr... 27 5.9
U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical pr... 26 7.8
AC024776-13|AAK68483.1| 374|Caenorhabditis elegans Nuclear horm... 26 7.8
>Z81512-4|CAB04170.1| 550|Caenorhabditis elegans Hypothetical
protein F25C8.4 protein.
Length = 550
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 172 YKN*TPIKIKHCVREEFTEGMPEGNKQTLLRR 77
Y N I+ KH VR T+ +P+ TLLRR
Sbjct: 485 YVNKRVIRYKHLVRVNITQFLPKSACGTLLRR 516
>Z69904-5|CAA93778.1| 250|Caenorhabditis elegans Hypothetical
protein ZK20.5 protein.
Length = 250
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 166 FYTLILNAVLISRREEVATSFESGF 240
FYT+ + +L + R E+ATS E F
Sbjct: 156 FYTIFIRIMLDTIRREIATSIEKSF 180
>Z66567-8|CAA91494.1| 402|Caenorhabditis elegans Hypothetical
protein ZK455.6 protein.
Length = 402
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 150 K*NTAFEKNLRKVCRKVINKHCLEGGMK 67
K N EK+LR +CR C+ GMK
Sbjct: 53 KGNCTVEKSLRNLCRSCRYTRCINEGMK 80
>Z66561-9|CAA91462.1| 402|Caenorhabditis elegans Hypothetical
protein ZK455.6 protein.
Length = 402
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 150 K*NTAFEKNLRKVCRKVINKHCLEGGMK 67
K N EK+LR +CR C+ GMK
Sbjct: 53 KGNCTVEKSLRNLCRSCRYTRCINEGMK 80
>AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical
protein Y116A8C.14 protein.
Length = 861
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 196 SVRRSKLKYKN*TPIKIKHCVREEFT 119
+V+ +L TP IKHC REE T
Sbjct: 267 NVQPEELAPSKITPFPIKHCAREELT 292
>AY204185-1|AAO39189.1| 400|Caenorhabditis elegans nuclear receptor
NHR-101 protein.
Length = 400
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -1
Query: 144 NTAFEKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPPSCR 13
N +K++R CR + C++ GM K+A D + Y TR P +
Sbjct: 57 NCPVDKSIRCACRFCRFEKCIQVGMDKSALQASRDRIGYTKRTRKPKTK 105
>AL022272-4|CAC42310.2| 391|Caenorhabditis elegans Hypothetical
protein H12C20.6a protein.
Length = 391
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -1
Query: 144 NTAFEKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPPSCR 13
N +K++R CR + C++ GM K+A D + Y TR P +
Sbjct: 48 NCPVDKSIRCACRFCRFEKCIQVGMDKSALQASRDRIGYTKRTRKPKTK 96
>Z47356-8|CAD27185.1| 477|Caenorhabditis elegans Hypothetical
protein E02H1.7 protein.
Length = 477
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Frame = -1
Query: 120 RKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPPSC 16
RK CR + CLE GM K A D++ PSC
Sbjct: 129 RKACRACRYRKCLESGMSKEALQPRRDLIGCRRIRSRPSC 168
>Z47075-8|CAA87381.2| 477|Caenorhabditis elegans Hypothetical
protein E02H1.7 protein.
Length = 477
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Frame = -1
Query: 120 RKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPPSC 16
RK CR + CLE GM K A D++ PSC
Sbjct: 129 RKACRACRYRKCLESGMSKEALQPRRDLIGCRRIRSRPSC 168
>U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical
protein F07E5.8 protein.
Length = 760
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 219 YKF*KRLFKSSISTWLIFYIF*THQIIKMVKKM 317
+K K+LFK ++ TWL+ + +H ++ V+K+
Sbjct: 254 FKDFKQLFKDTVDTWLLDVVG-SHNNLRSVRKL 285
>AC024776-13|AAK68483.1| 374|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 122 protein.
Length = 374
Score = 26.2 bits (55), Expect = 7.8
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -1
Query: 132 EKNLRKVCRKVINKHCLEGGMKKTADVVSYPSYTRPPSCRIPAA 1
E L+ CRK CLE GMK A + SY + I AA
Sbjct: 56 EAALKSPCRKCRFAKCLEVGMKSEAVQKNRDSYGKRRELAIYAA 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,173,704
Number of Sequences: 27780
Number of extensions: 119436
Number of successful extensions: 442
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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