Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P03
         (406 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5RJV1 Cluster: H/ACA ribonucleoprotein complex subunit...    83   2e-15
UniRef50_Q9NY12 Cluster: H/ACA ribonucleoprotein complex subunit...    80   2e-14
UniRef50_P28007 Cluster: H/ACA ribonucleoprotein complex subunit...    65   6e-10
UniRef50_Q5CN95 Cluster: Small nucleolar RNP proteins; Gar1p; n=...    59   3e-08
UniRef50_Q01ES1 Cluster: Gar1 Small nucleolar RNP protein GAR1, ...    57   1e-07
UniRef50_Q24CI3 Cluster: Gar1 protein RNA binding region contain...    53   2e-06
UniRef50_Q2UUR9 Cluster: H/ACA small nucleolar RNP component GAR...    49   3e-05
UniRef50_Q4U9W1 Cluster: SnoRNP (Nucleolar) protein, putative; n...    49   4e-05
UniRef50_Q8I700 Cluster: Snornp protein gar1 homologue, putative...    48   9e-05
UniRef50_A7ATB2 Cluster: Gar1 protein RNA binding region contain...    47   2e-04
UniRef50_O96722 Cluster: H/ACA ribonucleoprotein complex subunit...    39   0.043
UniRef50_UPI000049A3D6 Cluster: snoRNP protein gar1; n=1; Entamo...    37   0.18 

>UniRef50_Q5RJV1 Cluster: H/ACA ribonucleoprotein complex subunit
           1-like protein; n=5; Fungi/Metazoa group|Rep: H/ACA
           ribonucleoprotein complex subunit 1-like protein -
           Xenopus tropicalis (Western clawed frog) (Silurana
           tropicalis)
          Length = 218

 Score = 83.4 bits (197), Expect = 2e-15
 Identities = 37/61 (60%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
 Frame = +3

Query: 228 YDAGPPESVIPLGHYGWTVQDDLVCKVDIED--VPYFKAPIYLENKEHIGKIDEIYGNLR 401
           YD GPPESV+ +G +    +DD+VCK   ++  VPYF APIYLENKE IGK+DEI+G LR
Sbjct: 55  YDQGPPESVVEVGEFMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLR 114

Query: 402 D 404
           D
Sbjct: 115 D 115


>UniRef50_Q9NY12 Cluster: H/ACA ribonucleoprotein complex subunit 1;
           n=28; Eukaryota|Rep: H/ACA ribonucleoprotein complex
           subunit 1 - Homo sapiens (Human)
          Length = 217

 Score = 79.8 bits (188), Expect = 2e-14
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
 Frame = +3

Query: 231 DAGPPESVIPLGHYGWTVQDDLVCK--VDIEDVPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           D GPPE V+ LG +    +DD+VCK   D   VPYF AP+YLENKE IGK+DEI+G LRD
Sbjct: 63  DQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 122


>UniRef50_P28007 Cluster: H/ACA ribonucleoprotein complex subunit 1;
           n=40; Eukaryota|Rep: H/ACA ribonucleoprotein complex
           subunit 1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 205

 Score = 64.9 bits (151), Expect = 6e-10
 Identities = 26/61 (42%), Positives = 40/61 (65%)
 Frame = +3

Query: 222 QQYDAGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFKAPIYLENKEHIGKIDEIYGNLR 401
           + +  GPP++V+ +G +    + D+VC+     +PYF APIYLENK  +GK+DEI G L 
Sbjct: 27  RSFQQGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLN 86

Query: 402 D 404
           +
Sbjct: 87  E 87


>UniRef50_Q5CN95 Cluster: Small nucleolar RNP proteins; Gar1p; n=2;
           Cryptosporidium|Rep: Small nucleolar RNP proteins; Gar1p
           - Cryptosporidium hominis
          Length = 182

 Score = 59.3 bits (137), Expect = 3e-08
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = +3

Query: 234 AGPPESVIPLGHYGWTVQDDLVCKVDIED-VPYFKAPIYLENKEHIGKIDEIYG 392
           +GPP S+  LG    + + +LVCK  + D VPYF   I+LENKE IGK+DEI G
Sbjct: 32  SGPPSSITELGEVLHSSEHELVCKSFLNDQVPYFNGRIFLENKEEIGKVDEILG 85


>UniRef50_Q01ES1 Cluster: Gar1 Small nucleolar RNP protein GAR1,
           probable; n=3; Viridiplantae|Rep: Gar1 Small nucleolar
           RNP protein GAR1, probable - Ostreococcus tauri
          Length = 196

 Score = 57.2 bits (132), Expect = 1e-07
 Identities = 23/58 (39%), Positives = 36/58 (62%)
 Frame = +3

Query: 231 DAGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           D GPP S+  +G +    + ++VC    + VPYF   +YLENK  +GK++EI+G + D
Sbjct: 41  DEGPPSSLEEIGTFLHACEGEIVCLSTNKKVPYFNGAVYLENKTQVGKVEEIFGPVND 98


>UniRef50_Q24CI3 Cluster: Gar1 protein RNA binding region containing
           protein; n=1; Tetrahymena thermophila SB210|Rep: Gar1
           protein RNA binding region containing protein -
           Tetrahymena thermophila SB210
          Length = 204

 Score = 52.8 bits (121), Expect = 2e-06
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +3

Query: 231 DAGPPESVIPLGHYGWTVQDDLVCKV-DIEDVPYFKAPIYLENKEHIGKIDEIYG 392
           D GPPE V P+  +  T  D +V K  D++ VP F   IYLENK  +G +DEI G
Sbjct: 44  DMGPPERVEPVCVFSHTCGDQIVVKATDVKKVPKFNRGIYLENKTKVGTVDEILG 98


>UniRef50_Q2UUR9 Cluster: H/ACA small nucleolar RNP component GAR1;
           n=1; Aspergillus oryzae|Rep: H/ACA small nucleolar RNP
           component GAR1 - Aspergillus oryzae
          Length = 272

 Score = 49.2 bits (112), Expect = 3e-05
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +3

Query: 261 LGHYGWTVQDDLVCKVDIEDVPYFKAPIYLENKEHIGKIDEIYG 392
           +G +    + ++VC+     +PYF APIYLENK  IGK+DE+ G
Sbjct: 27  MGSFMHACEGEMVCESINPKIPYFNAPIYLENKTPIGKVDEVLG 70


>UniRef50_Q4U9W1 Cluster: SnoRNP (Nucleolar) protein, putative; n=2;
           Theileria|Rep: SnoRNP (Nucleolar) protein, putative -
           Theileria annulata
          Length = 174

 Score = 48.8 bits (111), Expect = 4e-05
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 228 YDAGPPESVIPLGHYGWTVQDDLVCKVDIED-VPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           Y    P  VI +G      +++LV K  + D VPYF   I+L NK+ +GKIDEI G + +
Sbjct: 28  YSNEVPSEVIEVGTVSHDCENELVIKCTLVDKVPYFNGRIFLSNKQEVGKIDEILGQVNN 87


>UniRef50_Q8I700 Cluster: Snornp protein gar1 homologue, putative;
           n=5; Plasmodium|Rep: Snornp protein gar1 homologue,
           putative - Plasmodium falciparum (isolate 3D7)
          Length = 209

 Score = 47.6 bits (108), Expect = 9e-05
 Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
 Frame = +3

Query: 285 QDDLVCKVDIED-VPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           ++DL+ K ++E+ VPYF   I+LENKE IGK+DEI G + +
Sbjct: 36  ENDLLLKNELENLVPYFNGRIFLENKEEIGKVDEILGPINE 76


>UniRef50_A7ATB2 Cluster: Gar1 protein RNA binding region containing
           protein; n=1; Babesia bovis|Rep: Gar1 protein RNA
           binding region containing protein - Babesia bovis
          Length = 189

 Score = 46.8 bits (106), Expect = 2e-04
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 234 AGPPESVIPLGHYGWTVQDDLVCKVDIED-VPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           +GPP  VI  G      ++ L+ K  +   VPYF   I+L NK+ IGK+DEI G + +
Sbjct: 34  SGPPAEVIEAGTVIHDCEEQLLIKSKLSTCVPYFNGRIFLANKQEIGKVDEILGPINE 91


>UniRef50_O96722 Cluster: H/ACA ribonucleoprotein complex subunit 1;
           n=1; Encephalitozoon cuniculi|Rep: H/ACA
           ribonucleoprotein complex subunit 1 - Encephalitozoon
           cuniculi
          Length = 195

 Score = 38.7 bits (86), Expect = 0.043
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 261 LGHYGWTVQDDLVCKVDIEDVPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           LG   +  Q  LV K+  +D+PY  +P+   + + IGK+DEI G + D
Sbjct: 32  LGKILYMCQGQLVIKLAAKDIPYPNSPVLDASSKIIGKVDEILGRIDD 79


>UniRef50_UPI000049A3D6 Cluster: snoRNP protein gar1; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: snoRNP protein gar1 -
           Entamoeba histolytica HM-1:IMSS
          Length = 182

 Score = 36.7 bits (81), Expect = 0.18
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 231 DAGPPESVIPLGHYGWTVQDDLVCKV-DIEDVPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           D  P   ++P G +    +  +V K       P F A +Y E K  +GK+ E++G L D
Sbjct: 23  DQQPSGELVPYGKFLHAAETVMVFKATSTTQYPAFNAIVYNEKKAEVGKVGEVFGPLND 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,862,153
Number of Sequences: 1657284
Number of extensions: 4718581
Number of successful extensions: 12555
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12545
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)