Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P03
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    64   6e-12
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   0.84 
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   1.5  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   5.9  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    24   7.8  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    24   7.8  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 64.5 bits (150), Expect = 6e-12
 Identities = 27/53 (50%), Positives = 37/53 (69%)
 Frame = +3

Query: 234 AGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFKAPIYLENKEHIGKIDEIYG 392
           +GPP+ VI LG +    + ++VC+     +PYF APIYLENK  IGKIDE++G
Sbjct: 24  SGPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFG 76


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 330 NKAHLQYPLCKLGRPEPSNHNGREE*HFLEDQHHIAVES 214
           N A +Q+ LC+L R +P N    E+ +F   Q   ++E+
Sbjct: 783 NVAFVQFQLCELIRQKPENSRTVEDLNFAMQQLDASIET 821


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -2

Query: 261 EE*HFLEDQH----HIAVESRLHRRHDLVHRQSHPD 166
           E+ H+    H    HIA+    HR++D +   S+PD
Sbjct: 103 EDLHYFTKHHINYYHIAMPGSKHRKNDCISSSSNPD 138


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = -2

Query: 204 RRHDLVHRQSHPDRGXXXXXXXXXXHDLRRHLLFRGRTYLDNYNVYTQNNNLKEQN 37
           RRH   H +S+ DR            D R H     R   +N+   T N+  + ++
Sbjct: 170 RRHRDRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDRYRHRD 225


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 90 YLDNYNVYTQNNNLKEQNP 34
          Y+D  N Y  + +LKE+NP
Sbjct: 28 YVDVENCYYNSKSLKEENP 46


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 233 CWSSRKCYSSRPLWLDGSGRPSLQSGY*RCALFQSSYL 346
           CWS   C++  P  L   G PS+      CA   +SY+
Sbjct: 116 CWS---CHTDYPTVLSKRGGPSMFQPTDDCAYLGTSYV 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,560
Number of Sequences: 5004
Number of extensions: 20040
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)