Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P03
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374...    63   7e-11
05_03_0502 - 14754532-14754851,14754959-14755042,14755553-147557...    27   7.5  
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478...    26   9.9  
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535...    26   9.9  
03_05_0811 - 27867228-27867701,27868313-27868497,27869123-27869393     26   9.9  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    26   9.9  

>11_06_0188 +
           21036465-21036627,21036735-21036883,21037369-21037484,
           21037939-21038101
          Length = 196

 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 27/58 (46%), Positives = 37/58 (63%)
 Frame = +3

Query: 231 DAGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           D GPP  V+ +  +    + D V K+  E VPYF APIYL+NK  IGK+DEI+G + +
Sbjct: 46  DEGPPAEVVEVSTFMHACEGDAVTKLTNEKVPYFNAPIYLQNKTQIGKVDEIFGPINE 103


>05_03_0502 -
           14754532-14754851,14754959-14755042,14755553-14755709,
           14756198-14756638,14757590-14757808,14757873-14758193
          Length = 513

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 321 HLQYPLCKLGRPEPSNHNGREE*HFLEDQHHIAVESRLHRRHDLVHRQ 178
           H+QY   +LGR + +   GREE HF  +  H ++   + R   +V +Q
Sbjct: 429 HVQYHRDRLGRRQAAAPEGREE-HF--NHCHSSLRGIVERTFGIVKKQ 473


>11_01_0600 -
           4780579-4780839,4781256-4781324,4781535-4781598,
           4781791-4781919,4782234-4782541
          Length = 276

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 204 RRHDLVHRQSHPDRG 160
           R  DL+HR+ HP RG
Sbjct: 124 RYQDLIHRKHHPQRG 138


>06_01_0728 -
           5356400-5356676,5356888-5357090,5357181-5357474,
           5357940-5358063,5358157-5359496
          Length = 745

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 389 INFVNLSDVFLIFKIDRSFEIRHIFNIHFAN*VVLNRPTIMAERNNTFWRTSI 231
           I+ VNL D+  + KI+ S  ++H  N        L R  ++ E    F   SI
Sbjct: 666 IHTVNLKDILDVNKINMSLCVQHTMNFQNIRERNLRRSELVMELKKLFEEMSI 718


>03_05_0811 - 27867228-27867701,27868313-27868497,27869123-27869393
          Length = 309

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 264 GHYGWTVQDDLVCKVDIEDVPYF-KAPIYLENKEHIGKIDEIYG 392
           GHYG  ++D+L    D+  V    K P  +E K  +   ++ YG
Sbjct: 154 GHYGLAIEDELSLGRDVGSVECLGKIPRSMEVKHELPMKEDGYG 197


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 222 QQYDAGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFKAPIYLENKEHIGKIDEI 386
           Q+   G P +  PLG    T       + ++ +  Y    + +E KE   K+DEI
Sbjct: 20  QRSGGGAPAASAPLGKGKGTTLRVAELEQELHEYQYNMGLLLIEKKEWTAKLDEI 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,863,059
Number of Sequences: 37544
Number of extensions: 128043
Number of successful extensions: 284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)