Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P03
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.36 
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)                      31   0.47 
SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_44860| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 236 WSSRKCYSSRPLWLDGSGRPSLQSGY 313
           W   K YS+ PLW+ G+G PS +S Y
Sbjct: 206 WLYNKVYSTTPLWVHGNG-PSKESDY 230


>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
          Length = 244

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 276 NHNGREE*HFLEDQHHIAVESR--LHRRHDLVHRQSH 172
           +H   EE H    QHH+  E     HR+H + H++ H
Sbjct: 207 HHVTYEEKHGTHRQHHVTYEEEHGTHRQHHVTHKEEH 243


>SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 279 SNHNGREE*HFLEDQHHIAVESRLHRRHDLVH 184
           S+H+ R++ H + D+HH+ ++   H   D +H
Sbjct: 440 SHHDTRDKHHDMRDKHHVKLDKH-HVSRDKLH 470


>SB_44860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 204 RRHDLVHRQSHPDRGXXXXXXXXXXHDLRRHLL-FRGRTYLDNYNV 70
           +RH L+H + +P +            DL+RHL+   G+ + +  NV
Sbjct: 377 KRHKLIHMRQNPHKCDECGKCFTLFGDLKRHLMTHSGQNHTNVMNV 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,231,173
Number of Sequences: 59808
Number of extensions: 146049
Number of successful extensions: 335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)