Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P03
         (406 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein famil...    80   3e-15
AY780787-1|AAV98357.1|  199|Homo sapiens nucleolar protein famil...    80   3e-15
AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.         80   3e-15

>BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein family
           A, member 1 (H/ACA small nucleolar RNPs) protein.
          Length = 217

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
 Frame = +3

Query: 231 DAGPPESVIPLGHYGWTVQDDLVCK--VDIEDVPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           D GPPE V+ LG +    +DD+VCK   D   VPYF AP+YLENKE IGK+DEI+G LRD
Sbjct: 63  DQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 122


>AY780787-1|AAV98357.1|  199|Homo sapiens nucleolar protein family A
           member 1 protein.
          Length = 199

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
 Frame = +3

Query: 231 DAGPPESVIPLGHYGWTVQDDLVCK--VDIEDVPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           D GPPE V+ LG +    +DD+VCK   D   VPYF AP+YLENKE IGK+DEI+G LRD
Sbjct: 63  DQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 122


>AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.
          Length = 217

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
 Frame = +3

Query: 231 DAGPPESVIPLGHYGWTVQDDLVCK--VDIEDVPYFKAPIYLENKEHIGKIDEIYGNLRD 404
           D GPPE V+ LG +    +DD+VCK   D   VPYF AP+YLENKE IGK+DEI+G LRD
Sbjct: 63  DQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 122


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,269,625
Number of Sequences: 237096
Number of extensions: 649122
Number of successful extensions: 1149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2985693880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)