Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P03
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...    73   6e-14
AL032648-4|CAA21700.1|  257|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z68299-6|CAA92610.2|  412|Caenorhabditis elegans Hypothetical pr...    26   9.0  
U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score = 73.3 bits (172), Expect = 6e-14
 Identities = 30/56 (53%), Positives = 39/56 (69%)
 Frame = +3

Query: 228 YDAGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFKAPIYLENKEHIGKIDEIYGN 395
           YD GPPE V+ +G +    QDD+VC      +PYF APIY +NKE +GKIDEI+G+
Sbjct: 52  YDQGPPEEVVLVGVFSHQCQDDIVCNNTSGKIPYFNAPIYFKNKEQVGKIDEIFGS 107


>AL032648-4|CAA21700.1|  257|Caenorhabditis elegans Hypothetical
           protein Y54G9A.5 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 330 NKAHLQYPLCKLGRPEPSNHNGRE 259
           N+  L + LC L RP+ SNH  RE
Sbjct: 150 NRTALAHFLCDLDRPKSSNHYERE 173


>Z68299-6|CAA92610.2|  412|Caenorhabditis elegans Hypothetical
          protein T04B2.3a protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 69 YTQNNNLKEQNPACFIQFLT 10
          Y QNNN KEQ P   + F T
Sbjct: 16 YYQNNNSKEQEPLKIVPFQT 35


>U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical
           protein E04F6.4 protein.
          Length = 635

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 306 VDIEDVPYFKAPIYLENKEHIGKID 380
           VDI  + YF + IY +N+E   +ID
Sbjct: 423 VDISVMQYFPSWIYFKNREFFSQID 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,911,525
Number of Sequences: 27780
Number of extensions: 115197
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)