Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P02
         (369 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8RR73 Cluster: Pectate lyase P358; n=3; Bacillus|Rep: ...    33   1.3  
UniRef50_Q4Q1F5 Cluster: Dihydrolipoamide acetyltransferase, put...    32   2.9  
UniRef50_A0NMB1 Cluster: Transcriptional regulator, AraC family ...    31   5.1  
UniRef50_A5LB44 Cluster: Putative uncharacterized protein; n=5; ...    31   6.7  

>UniRef50_Q8RR73 Cluster: Pectate lyase P358; n=3; Bacillus|Rep:
            Pectate lyase P358 - Bacillus sp. P-358
          Length = 1438

 Score = 33.5 bits (73), Expect = 1.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 220  FPNFAGRSNGVGAAAFRSGKSKSPIIADDF 309
            + NFAGR NGVG     SG +   + ADDF
Sbjct: 1168 YDNFAGRDNGVGGTLGTSGSASVYLRADDF 1197


>UniRef50_Q4Q1F5 Cluster: Dihydrolipoamide acetyltransferase,
           putative; n=6; Trypanosomatidae|Rep: Dihydrolipoamide
           acetyltransferase, putative - Leishmania major
          Length = 463

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -1

Query: 270 SKGRGSYTVTSSCEIGKG-ERRNSTMPDIKKAFAK*HIRLSVTIDRVEAESR*SALATEI 94
           +KG G Y +T +  I K   R N+ +P++  ++    IR   T+D   A +  + L T I
Sbjct: 276 AKGNGEYKITVNDYIVKAVARANTLVPEVNSSWQGDFIRQYATVDVSVAVATPTGLITPI 335

Query: 93  IAKSTSEG 70
           I  + ++G
Sbjct: 336 IRNAQAKG 343


>UniRef50_A0NMB1 Cluster: Transcriptional regulator, AraC family
           protein; n=3; Alphaproteobacteria|Rep: Transcriptional
           regulator, AraC family protein - Stappia aggregata IAM
           12614
          Length = 302

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = -3

Query: 250 HRYFFLRNWERGKTELH------DA*YQEGFRQMTH 161
           HRY  +R  ER KTELH      DA +  GF   +H
Sbjct: 242 HRYLVMRRLERAKTELHQGASLADAAFASGFSDQSH 277


>UniRef50_A5LB44 Cluster: Putative uncharacterized protein; n=5;
           Streptococcus pneumoniae|Rep: Putative uncharacterized
           protein - Streptococcus pneumoniae SP3-BS71
          Length = 256

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 12/53 (22%), Positives = 31/53 (58%)
 Frame = +2

Query: 71  PSEVDLAIISVARALHRLSASTLSMVTDSLMCHLAKAFLISGIVEFRLSPFPI 229
           P  V L ++  + ++   +  +L+++  S + HLA   +++G+ ++ L+P P+
Sbjct: 157 PLNVSLLMVFFSISIKEATMYSLAIIFFSQLSHLATIVVVTGLNQYHLAPVPV 209


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,666,906
Number of Sequences: 1657284
Number of extensions: 4967866
Number of successful extensions: 10866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10865
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)