Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P02
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   2.1  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   2.8  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    25   2.8  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    24   6.5  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    24   6.5  
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    24   6.5  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    24   8.6  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 223 PNFAGRSNGVGAAAFRSGKSKSPIIADDFLAVVLSD 330
           PN  G+SNG+  A + S + K+  + D  L   ++D
Sbjct: 18  PNSTGKSNGIKKAVYTSTRKKTVGVDDLTLLSKITD 53


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 145 GYRQPDVSFGESLLDIRHRGVPSFPFPNFAGRSNGVGAAA 264
           GY   D  FGE   D  H  VPS+  PN      G  A +
Sbjct: 498 GYVTSD-DFGEDGDDTVHTSVPSYATPNILQAQAGFNATS 536


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 211 SFPFPNF-AGRSNGVGAAAFRSGKSKSPIIADDFLAVV 321
           +F   NF AG ++G+G++  R  + K+ +  DD  A +
Sbjct: 164 TFGAQNFGAGGASGIGSSGRRGDRGKTVLTVDDLSAAL 201


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 197  IVEFRLSPFPISQEEVTV*E 256
            +V FRL+P P+  EEV + E
Sbjct: 1015 LVAFRLTPVPVKLEEVEMYE 1034


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 80  VDLAIISVARALHRLSASTLSMVTDSLMCHLAKAFL 187
           VD+ +  +  AL  +S S  + V  S++C++ K F+
Sbjct: 442 VDIILPIIYPALFEISKSHWNRVIHSMVCNVLKLFM 477


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
           L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 208 PSFPFPNFAGRSNGVGAAAFRSGKSKSP 291
           P   +  F  ++ G G   FR G  KSP
Sbjct: 74  PKDKYTMFTRKTQGAGLQGFRKGVHKSP 101


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 148 YRQPDVSFGESLLDIRHRGVPSFPFPNFAGRSNGVGAAAFRSGKSKSPIIADDFL 312
           +R+  V  G +L D+  +  P +PFP   G   G+     +      P  A DF+
Sbjct: 415 FRRGWVKQGYALSDLPFKS-PLYPFPQLIGFVIGIILTLVQGWTVFKPFAAGDFV 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,207,929
Number of Sequences: 5004
Number of extensions: 20086
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)