Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P02
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261...    28   2.0  
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    27   4.6  
03_05_0231 - 22170343-22172004,22172225-22172449                       27   4.6  
01_03_0029 - 11784446-11784756,11785295-11786576                       27   4.6  
06_03_1461 - 30322436-30322912,30323013-30323264,30323416-303235...    26   8.1  
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890...    26   8.1  

>08_02_0818 -
           21524539-21524664,21524911-21524961,21525800-21526170,
           21526497-21526852,21527926-21527996
          Length = 324

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 9   SCRVIRPRWAIGVRCSVTSSSLRRWIWQ 92
           S R  + RW  GV   VT  +LRR +W+
Sbjct: 140 SPRETKQRWGWGVSVQVTMDALRRELWE 167


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 181 LLDIRHRGVPSFPFPNFAGRSNGVGAAAFRSGKSKSPIIAD 303
           LL++   G  +   P   G   G G AAF+SG +K+P IA+
Sbjct: 398 LLELMRPGQRALLLP---GGRGGRGNAAFKSGTNKAPRIAE 435


>03_05_0231 - 22170343-22172004,22172225-22172449
          Length = 628

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 11  LPRHSA*VGNRCPV-QRHKQQPSEVDLAIISVARALHRLSASTLSMVTDSLMCHLAKAFL 187
           LPR     G+  P+  RH     +  LA I   R L+ LS +    + DSL+ H    FL
Sbjct: 8   LPRRDN--GDGDPILSRHSSSSDDPILARIDEERGLNLLSGNLYGAILDSLVPHAHGPFL 65


>01_03_0029 - 11784446-11784756,11785295-11786576
          Length = 530

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
 Frame = +1

Query: 148 YRQPDVSFGESLLDIRH---------RGVPSFPFPNFAGRSNGVGAAAFRSGKSKSPIIA 300
           +R+PD+S  ++L  +R          RG P  P P  A   +   AAA+R+ +   P   
Sbjct: 203 HRRPDLSRDDALRHLRADLRAAVASARGSPPPPLP--AESDSEAEAAAYRAAQHPKPAAL 260

Query: 301 DDFLAVVL 324
             FLA VL
Sbjct: 261 AHFLATVL 268


>06_03_1461 -
           30322436-30322912,30323013-30323264,30323416-30323564,
           30323713-30323998
          Length = 387

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 107 RALHRLSASTLSMV-TDSLMCHLAKAFLISGIVEFRLSPFPISQEE 241
           R++    A+ +S V T ++  HLA++F + G+V   +  F  +Q++
Sbjct: 158 RSMEATRAAMVSKVGTRAVAAHLARSFFLLGVVNNDMFVFATAQQQ 203


>06_03_1384 +
           29786028-29786657,29788581-29788711,29788987-29789028,
           29789383-29789441,29789774-29790070,29790180-29790289,
           29790966-29791070,29791201-29791263,29791766-29791933,
           29792111-29792248
          Length = 580

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 279 LSRSKGRGSYTVTSSCEIGKGERRNSTMPDIKKAFAK*HIRLSVTIDRVEAE 124
           L +  GRG +  T S  + KGE +  T+    K  AK  +  +++I+ V  E
Sbjct: 174 LGKEVGRGHFGHTCSAVVKKGEYKGQTV--AVKIIAKAKMTTAISIEDVRRE 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,283,619
Number of Sequences: 37544
Number of extensions: 144556
Number of successful extensions: 336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)