Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P02
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68160-1|CAA92294.2|  489|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U58758-7|AAO38576.1|  220|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U58758-4|AAK68614.1|  914|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U58758-3|AAK68615.1|  905|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>Z68160-1|CAA92294.2|  489|Caenorhabditis elegans Hypothetical
           protein D1046.1 protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 255 SYTVTSSCEIGKGERRNSTMPDIKK 181
           SY  T+  ++   + +N T PD+KK
Sbjct: 163 SYNKTNQAKLEDAQAKNQTRPDVKK 187


>U58758-7|AAO38576.1|  220|Caenorhabditis elegans Hypothetical
           protein ZK1127.9d protein.
          Length = 220

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 193 RHRGVPSFPFPNFAGRSNGVGAAAFRSG 276
           R RG P    P FAGR  G       SG
Sbjct: 58  RGRGGPGMAPPGFAGRGRGFATPGMSSG 85


>U58758-4|AAK68614.1|  914|Caenorhabditis elegans Hypothetical
           protein ZK1127.9a protein.
          Length = 914

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 193 RHRGVPSFPFPNFAGRSNGVGAAAFRSG 276
           R RG P    P FAGR  G       SG
Sbjct: 67  RGRGGPGMAPPGFAGRGRGFATPGMSSG 94


>U58758-3|AAK68615.1|  905|Caenorhabditis elegans Hypothetical
           protein ZK1127.9b protein.
          Length = 905

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 193 RHRGVPSFPFPNFAGRSNGVGAAAFRSG 276
           R RG P    P FAGR  G       SG
Sbjct: 58  RGRGGPGMAPPGFAGRGRGFATPGMSSG 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,758,234
Number of Sequences: 27780
Number of extensions: 115062
Number of successful extensions: 254
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)