Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P01
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    30   0.18 
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   2.2  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    24   8.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   8.7  

>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 252 FSINHSIYSNVNIEKNHLNYLSLTHKDNNIWRYTHEYEKNLSRLNKYDMTHFSNKK 85
           F +N S+ SNVN +   L++L +  K    W +    E N    NK +++   N++
Sbjct: 97  FELN-SMKSNVNTDAKLLDFLQVQEKGVLAWHFIPNQEYNCYVKNKTELSFLGNEE 151


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 92  LEKCVISYLLSLDKFFSYSCV*RQILLSL----CVRER*FKWFFSIFTLEYIEWFIEKKN 259
           L K V  +LLS+  + S S   R I LSL    C  +R  KW+  I       WFIE++N
Sbjct: 416 LRKEVWPFLLSVYPWDSTSEERRVIYLSLQEEYCTLKR--KWYEDIHKQFNDRWFIEQRN 473


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 KIFSIANNCSLRNLYKPNLVSIAH 326
           KIFS +N   ++NL   NL + +H
Sbjct: 214 KIFSCSNTTEIKNLNNLNLTTNSH 237


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 174  DNNIWRYTHEYEKNLSRLNKYDMTHFSNKKNLALILI 64
            D N W    E +KNL++LN++    F +++++  I +
Sbjct: 2945 DQNDWA---EIKKNLNKLNEFQPLKFDSEESVTEIFM 2978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,737
Number of Sequences: 5004
Number of extensions: 33048
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)