Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P01
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387...    30   0.91 
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170...    30   0.91 
05_04_0345 + 20451497-20451740,20452078-20452159,20452837-204528...    29   1.6  
05_01_0470 - 3747783-3748097,3749433-3750305                           27   8.5  

>12_02_1200 +
           26937624-26937674,26937913-26938005,26938582-26938728,
           26940299-26940379,26940711-26940849,26940977-26941013,
           26941095-26941202,26941434-26941533,26941638-26941783,
           26941862-26941953,26942086-26942180,26942435-26942531,
           26942623-26942766,26942912-26943129,26943213-26943323
          Length = 552

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 180 HKDNNIWRYTHEYEKNLSRLNK 115
           +KD+N+WR T E ++ L RL K
Sbjct: 216 YKDDNLWRTTSEEKRELERLQK 237


>08_02_1441 -
           27116242-27116354,27116646-27116742,27116841-27117058,
           27117279-27117422,27117512-27117608,27117932-27118026,
           27118140-27118231,27118326-27118471,27118565-27118664,
           27118857-27118964,27119040-27119085,27119210-27119345,
           27119847-27120044
          Length = 529

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 180 HKDNNIWRYTHEYEKNLSRLNK 115
           +KD+N+WR T E ++ L RL K
Sbjct: 160 YKDDNLWRTTSEEKRELERLQK 181


>05_04_0345 +
           20451497-20451740,20452078-20452159,20452837-20452882,
           20453669-20454352
          Length = 351

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 311 SFDSPFGHLKGLAIFTNIKNSDPN 382
           +FDSPFG +    ++T IKN +P+
Sbjct: 191 TFDSPFGVILNRPLYTKIKNVNPS 214


>05_01_0470 - 3747783-3748097,3749433-3750305
          Length = 395

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 308 FSFDSPFGHLKGLAIF--TNIKNSDPNIYLIK 397
           FS  +P G L G+AIF  T   +S PN  +I+
Sbjct: 306 FSVTTPLGILLGMAIFHMTGYDDSSPNALIIE 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,746,508
Number of Sequences: 37544
Number of extensions: 147475
Number of successful extensions: 274
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)