Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P01
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16252| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               32   0.23 
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     27   8.7  
SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)                   27   8.7  

>SB_16252| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 580

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 255 FFSINHSIYSNVNIEKNHLNYLSLTHKDNNIWRYTHEYEKNLSRLNKYD-MTHFSN 91
           FF++   +  +VN    H+  L+ THKDNN  +YTH+   +L     Y+ + H+ N
Sbjct: 211 FFAV---VIYHVNDVLTHVT-LNSTHKDNNFQKYTHDQIDSLGFPYDYNSIMHYQN 262


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 222  VNIEKNHLNYLSLTHKDNNIWRYTHEYEKNLSRL 121
            VN  K+H   + +  +DN ++ Y +E+ ++ SRL
Sbjct: 951  VNFFKDHTKVVLIPGEDNALFIYINEHRESTSRL 984


>SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)
          Length = 515

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 225 NVNIEKNHLNYLSLTHKDNNIWRYTHEYEKNLSRLNKYDM 106
           + N +K+ LN+  +   D  IW+  HE E+ +      DM
Sbjct: 391 SANNDKDLLNHKKIVGFDKKIWKVHHEKEQMIGAGGAEDM 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,031,044
Number of Sequences: 59808
Number of extensions: 202499
Number of successful extensions: 382
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)