Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O24
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   0.67 
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    26   0.89 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   2.1  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   2.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   2.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    24   4.7  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    24   4.7  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    23   8.3  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    23   8.3  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    23   8.3  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    23   8.3  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    23   8.3  

>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 0.67
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 60  NHKNIHDIHKKNMVFTSSRISNESTSPTAFGLSLV 164
           NH  ++D+ KK ++       N  TSP  F   LV
Sbjct: 172 NHPKLYDLTKKQLISKMDSSYNYDTSPLEFNSWLV 206


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -2

Query: 208 ERDIEQLQRWYEDLLTKL----RPNAVGLVDSFD--IRDEVNTMFFLC 83
           E+D EQL+ W ++ L        P   G  D  D  +++  N +FF C
Sbjct: 322 EKDCEQLKEWLDEALHSFIVVQGPRGSGKRDLVDRVVKERKNVLFFDC 369


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 220 TSISERDIEQLQRWYEDLLTKLRPN 146
           T++    +  LQ+W+ ++LTK+ P+
Sbjct: 442 TTLIITPVSLLQQWHNEILTKIAPS 466


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 108 SSRISNESTSP--TAFGLSLVSKSSYQRCSCSMSRSDIDVN 224
           S  + ++ + P   + G SL  K S  R   SMSR+++DV+
Sbjct: 123 SDSLKHQKSHPMLNSLGSSLSLKKSVSRPPSSMSRTNLDVS 163


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 93  FFYVCHGYFYGLFN 52
           FF+ CHG  Y LF+
Sbjct: 415 FFHCCHGQSYNLFH 428


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 84  HKKNMVFTSSRISNESTSPTAFGLSLVSKSSYQRC-SCSMSRSDIDVN 224
           +K +  +  S     S  P ++GLS +SK + Q   S S      DV+
Sbjct: 78  NKNSDKYNGSLGDKGSFDPNSYGLSAISKQATQEALSISQGNDSYDVS 125


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 241 CIQLWQFTSISERDIEQLQRWY--EDLLT---KLRPNAVGLVD 128
           CI +W F +  ++ I  + R Y  +D+LT    L  N +  VD
Sbjct: 127 CIDMWMFLANVQKAISSVTRSYSNDDILTDEGALNENYLNTVD 169


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 84  HKKNMVFTSSRISNESTSPTAFGL 155
           H + +VF    ++  STSP  FGL
Sbjct: 365 HIEKVVFDLKYVTEFSTSPNDFGL 388


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 238 IQLWQFTSISERDIEQLQRWYEDLLTK 158
           +QLW     SE   +     YED++T+
Sbjct: 328 LQLWDSLFYSEEQRKSFTPMYEDIITE 354


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 239 YSIMAVYIDIGTRH*TAAALVRRLAH*TEAERGGARRLV 123
           YS MA+   +   H    ALVR L +  E  RGG R ++
Sbjct: 267 YSEMAMCYPLMQGHQPEWALVRGLNYEREMMRGGRRGIL 305


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 YIERVDEPHRVRPQFSEQVFVPTLQLFNVAFRYRCKL 226
           Y+ R+D   R+   FS ++ +    L N+A   R +L
Sbjct: 196 YLSRLDNDRRLADHFSGKMHLGYAMLRNIARDLRAQL 232


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 57  FNNVITLYFNYDLLVLTSC 1
           F+N+ TL  N+D LVL  C
Sbjct: 159 FSNLNTLSDNFDRLVLNFC 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,094,261
Number of Sequences: 5004
Number of extensions: 19347
Number of successful extensions: 51
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)