Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O22
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    41   8e-05
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.5  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    25   5.9  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   5.9  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   7.8  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.8  

>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
 Frame = +1

Query: 232 WKMYFEKYVDVKVE----DGKFRVYLS-PEPDHPERPRIITLHGGGYSGLSWSLFTEEIT 396
           W+ YF++ + +  E    +G    YL+ P+PD      ++  HG G S +S++  T+E+ 
Sbjct: 37  WRNYFDEKLTIPGESGALNGTINGYLTLPQPDGC---LLVLQHGAGSSAMSFAPVTQELL 93

Query: 397 NMIHCQV--VSIDLRGHGESKLQNSDDL 474
           +    +V  +++DLR HGE+ L+   D+
Sbjct: 94  SNSDNKVGFLALDLRAHGETTLEPESDM 121


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 196  GGGRRRDYNPVSWKMYFEKYVDVKVEDGKFRVYLSPEP 309
            G G+  DY    + +YF  Y+D K+++ KF +   P P
Sbjct: 1130 GRGQPLDYG---YSIYFPMYIDWKMDEAKFLIRDYPLP 1164


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 289 VYLSPEPDHPERPRIITLHGGGYSGLSWSLFTEEITNMIH 408
           V ++P   H     +I LHG G SG  WS      +N  H
Sbjct: 8   VIINPSVAHTAT--VIFLHGLGDSGQGWSFMANTWSNFKH 45


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 319 ERPRIITLHGGGYSGLSWSLFTEEITNMIHCQVVSIDLRGHGES 450
           + P ++  HG   S  +W    ++ +  +   + +ID R HG+S
Sbjct: 19  KHPPVLIFHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDS 62


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 276 VLYLNIYILFKVHLPRYRIVISSTSTSTEW 187
           VL +++ I + VH+PR   ++ S   S++W
Sbjct: 471 VLAIDLPIEYLVHIPRLLPILPSFMKSSQW 500


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +1

Query: 130 MKNKLPPRCPRTSDVSKLAPFSGGGRRRDYNPVSWKMYFEKYVDVKVEDGKFRV 291
           M NK  P  P    +S     +  G   + +P   K     ++DV+   G FR+
Sbjct: 10  MSNKGTPEQPMRKPLSGSYSHNSAGPTPNMSPFEQKPPLPTHMDVRRPSGPFRI 63


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 428 SMDTTWQWIIFV 393
           S +TTW+WI F+
Sbjct: 238 SQNTTWRWIFFI 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,018
Number of Sequences: 5004
Number of extensions: 42700
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)