Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O22
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0005 + 22095107-22095210,22095347-22095431,22095553-220956... 64 7e-11
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 32 0.27
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 31 0.36
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 31 0.47
12_01_0231 + 1744323-1745276,1745516-1746193 30 0.83
07_03_1468 - 26739872-26740912 30 0.83
01_06_0063 + 26100877-26101144,26101683-26101990,26102133-261028... 30 0.83
11_01_0234 + 1804581-1805357,1805941-1806447 29 1.9
06_03_0061 + 16111250-16111588,16111607-16111738,16112006-161121... 29 1.9
10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800 29 2.5
11_04_0251 - 15348685-15349257,15349295-15349381 28 3.3
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008... 28 3.3
01_01_0379 - 2956396-2957409 28 3.3
02_01_0634 + 4754175-4755092,4755546-4756172 28 4.4
11_01_0233 + 1801011-1802081 27 7.7
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 7.7
03_02_0113 + 5697089-5697245,5697983-5698056,5698217-5698296,569... 27 7.7
01_06_1393 - 36999631-36999723,37000244-37000393,37000413-370005... 27 7.7
>04_04_0005 +
22095107-22095210,22095347-22095431,22095553-22095623,
22096613-22096727,22096884-22096963,22097302-22097386,
22098081-22098175,22098298-22098348,22098866-22098946,
22099659-22099731,22100057-22100134,22100224-22100256
Length = 316
Score = 63.7 bits (148), Expect = 7e-11
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Frame = +1
Query: 217 YNPVSWKMYFEKYVDVKVEDGK--FRVYLSPEPDHPERPRIITLHGGGYSGLSWSLFTEE 390
Y P+ W YF++ V + D + F VY++ E P + LHGGGYSGLS++L
Sbjct: 41 YAPLDWSAYFDEERRVAIPDTEDVFNVYMA----RSEGPVVFCLHGGGYSGLSFALAASR 96
Query: 391 ITNMIHCQVVSIDLRGHGESKLQNSDDL 474
+ +VVS+DLRGHG+S + DL
Sbjct: 97 MKE--KARVVSMDLRGHGKSTTSDDSDL 122
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 31.9 bits (69), Expect = 0.27
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +1
Query: 211 RDYNPVSWKMYFEKYVDVKVEDGKFRVYLSPEPDHPERPRIITLHGGGYSGLSWSLFTEE 390
R Y+ + YF + V ++ ++V L D I+ LHG + W +
Sbjct: 1446 RTYSEEKLRSYF---IQVDGDNFSYQVKLQEGGDCTHEKVILFLHGFLGTSEDWVPMMKA 1502
Query: 391 ITNMIHCQVVSIDLRGHGESKLQNSD 468
++ +V+++DL GHGES++ D
Sbjct: 1503 LSPS--ARVIAVDLPGHGESEILQHD 1526
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 31.5 bits (68), Expect = 0.36
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 154 CPRTSDVSKLAPFSGGGRRRDYNPVSWKMYFEKYVDVKVEDGKFRVYLSPEPD 312
CP D ++ F G G + PV+ F+ + K +D K + +P+PD
Sbjct: 164 CPAHCDTTRAMCFCGPGTKYPDRPVAEACGFKTILPKKPDDSKLTDWKTPDPD 216
>10_07_0176 - 13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = -1
Query: 219 VISSTSTSTEWCQL*NIRCSRTSWW*FIFHYTFV*SRHN*DQ--YYVIAEIICNFFYYIS 46
++ S ++ T W + ++ S T+W+ FIF Y+ + + + + Y+VI ++ FF+Y++
Sbjct: 968 LLMSCNSITRWHYI-SVAGSITAWFMFIFIYSAIMTSFDRQENVYFVIYVLMSTFFFYLT 1026
>12_01_0231 + 1744323-1745276,1745516-1746193
Length = 543
Score = 30.3 bits (65), Expect = 0.83
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 259 DVKVEDG-KFRVYLSPEPDHPERPRIITLHGGGY--SGLSWSLF 381
DV + G R+YL+ RP ++ HGGG+ S +WSL+
Sbjct: 71 DVATDHGVDVRLYLTTTTPAGRRPVLVHFHGGGFCLSHAAWSLY 114
>07_03_1468 - 26739872-26740912
Length = 346
Score = 30.3 bits (65), Expect = 0.83
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 286 RVYLSPEPDHPERPRIITLHGGGYSGLS-WSLFTEEITNMIHCQVVSIDLR 435
RV+ SP P RP ++ HGGG++ S S + + + VVS+D R
Sbjct: 77 RVFYSPSPS--PRPVVVYFHGGGFTLFSAASRAYDALCRTLCAVVVSVDYR 125
>01_06_0063 +
26100877-26101144,26101683-26101990,26102133-26102849,
26103338-26103466,26103594-26103698,26103732-26103797,
26104102-26104302,26104437-26104562
Length = 639
Score = 30.3 bits (65), Expect = 0.83
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +1
Query: 262 VKVEDGKFRVYLSP-----EPDHPERPRIITLHGGGYSGLSWSLFTEEITNMIHCQVVSI 426
+ V+DG V L P E + ++ +HG G SW T ++ + C V++
Sbjct: 342 LSVDDGSADVCLKPMGFDLEAGEQGKFAVVLVHGFGGGVFSWRHVTNLLSRQVGCTVLAF 401
Query: 427 DLRGHG 444
D G G
Sbjct: 402 DRPGWG 407
>11_01_0234 + 1804581-1805357,1805941-1806447
Length = 427
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 259 DVKVEDG-KFRVYLSPEPDHPERPRIITLHGGGY--SGLSWSL 378
DV + G R+YL+ RP ++ HGGG+ S +WSL
Sbjct: 71 DVATDHGVDVRLYLTTTAPARRRPVLVHFHGGGFCLSHAAWSL 113
>06_03_0061 +
16111250-16111588,16111607-16111738,16112006-16112170,
16112278-16112319,16112418-16113179
Length = 479
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 160 RTSDVSKLAPFSGGGRRRDYNPVSWKMY 243
R D+ KLAP GG R Y P WK Y
Sbjct: 434 RLEDI-KLAPVKEGGYGRLYGPFCWKAY 460
>10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800
Length = 332
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 262 VKVEDGKFRVYL-SPEPDHPERPRIITLHGGGYSGLSWSLFTEEITNMIHCQVVSIDLRG 438
V++ DG+ Y S P R +I+ HG S L + E+ + +V+ D G
Sbjct: 37 VRLSDGRHLAYEESGVPKEAARYKIVFSHGFTGSRLDSLRASPEVAEELGVYMVAFDRAG 96
Query: 439 HGES 450
+GES
Sbjct: 97 YGES 100
>11_04_0251 - 15348685-15349257,15349295-15349381
Length = 219
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 304 EPDHPERPRIITLHG-GGYSG 363
E D P RPR+ T HG GG SG
Sbjct: 89 EEDAPARPRVATAHGRGGTSG 109
>07_03_1557 -
27699675-27699972,27700546-27700630,27700741-27700847,
27700942-27701135,27701252-27701368,27701466-27701631,
27701723-27701887,27702185-27703428
Length = 791
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 99 DQYYVIAEIICNFFYYISRCWFSTFGRPENPSC 1
DQY + ++ NF + + + WF F R + C
Sbjct: 603 DQYTTLKDLDLNFIFRLKKQWFHEFQRQVDRDC 635
>01_01_0379 - 2956396-2957409
Length = 337
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 280 KFRVYLSPEPDHPER-PRIITLHGGGY 357
K RVY P ER P ++ HGGGY
Sbjct: 65 KLRVYRPPTAGDAERLPVLVCFHGGGY 91
>02_01_0634 + 4754175-4755092,4755546-4756172
Length = 514
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 52 IIKEITNYFCYDIILILIMSALHKSIMK 135
++++IT Y C + L+L+ LHK K
Sbjct: 3 MVQDITGYLCLSLALLLLTLVLHKVARK 30
>11_01_0233 + 1801011-1802081
Length = 356
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = +1
Query: 286 RVYLSPEPD------HPERPRIITLHGGGY--SGLSWSLF 381
R+YL EP RP ++ LHGGG+ S SW+L+
Sbjct: 71 RLYLPAEPPAAAPRPRRRRPLLLHLHGGGFCLSRPSWALY 110
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 133 KNKLPPRCPRTSDVSKLAPFSGGGRRRDYNPVSWKMYFEKYVDVK 267
K L P+ P +++ LA +G R + WKM+FEKY D K
Sbjct: 201 KEMLMPKDPN-ANIIMLATGTGIAPFRSF---LWKMFFEKYDDYK 241
>03_02_0113 +
5697089-5697245,5697983-5698056,5698217-5698296,
5699017-5699168,5700750-5700991
Length = 234
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 406 HCQVVSIDLRGHGESKLQNSDDL 474
H +VV ++ RGH ++LQN D L
Sbjct: 80 HEKVVVVECRGHDAARLQNIDHL 102
>01_06_1393 -
36999631-36999723,37000244-37000393,37000413-37000500,
37001362-37001465,37003115-37003192,37004247-37004369,
37004508-37004615
Length = 247
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 206 RPPPLNGANFETSD 165
+PPP+ GA FET+D
Sbjct: 179 QPPPIQGAEFETAD 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,510,430
Number of Sequences: 37544
Number of extensions: 279034
Number of successful extensions: 681
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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