Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O20
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.6  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.8  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    25   8.8  

>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 302 LEFCVRMPI*DRL-LEEIKILLFFNTLSLICS 210
           L FC +  +  R  LEEI   L FN+L  +CS
Sbjct: 321 LVFCTQTSLQQRQKLEEITSFLSFNSLKSLCS 352


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 88  VHLSFFLSRLRVVIFFLFCCYWRIGVIL 5
           +H+ F L     +I+ L   +WR+GVI+
Sbjct: 465 LHIIFTLDNF--IIYTLMAVFWRLGVII 490


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 507 YISKVCFLVRGKLENYW 557
           Y+SKV +  R KL+ YW
Sbjct: 126 YLSKVLYARRNKLDPYW 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,222
Number of Sequences: 5004
Number of extensions: 44488
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)