Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O20
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106...    28   6.8  
09_02_0106 + 4347024-4347536,4349619-4349700,4350499-4350747,435...    27   9.0  

>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
            29411035-29411045,29411420-29415325,29415437-29415920
          Length = 1574

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 203  IFTNISEIKY*KITKFLFLPIIDLRS-ASLRKTLKKDYSLVL 325
            +F+N++E+K   +TK   LP+  L+S +SLR    +D S VL
Sbjct: 1068 VFSNLTELKELTLTKCPPLPLEHLQSLSSLRMLCMQDLSNVL 1109


>09_02_0106 +
           4347024-4347536,4349619-4349700,4350499-4350747,
           4351594-4351646,4353064-4353159,4353289-4353423
          Length = 375

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = -2

Query: 465 SMKEEESY-SRKFKSQAPATRERILLLSNEILSIAISTP 352
           S++EE ++ S+K +S + AT++  +  +NE+ S+  +TP
Sbjct: 252 SLREESNHNSQKHRSVSLATQQMTVANANEVQSLTSTTP 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,772
Number of Sequences: 37544
Number of extensions: 236115
Number of successful extensions: 474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)