Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O20
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          25   0.45 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.2  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   3.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   7.3  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 513 SKVCFLVRGKLENYW 557
           SKVC +VR KLE  W
Sbjct: 54  SKVCIVVRRKLEENW 68


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 437 RLYDSSSFIDMFGQMVLKSLIVNIYKQGLF 526
           R YD  S +DM+    +    +  YKQG+F
Sbjct: 61  RNYDMESNMDMYKDKNVVQKFLWWYKQGMF 90


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 437 RLYDSSSFIDMFGQMVLKSLIVNIYKQGLF 526
           R YD  S +DM+    +    +  YKQG+F
Sbjct: 61  RNYDMESNMDMYKDKNVVQKFLWWYKQGMF 90


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 257 EIKILLFFNTLSLI 216
           +IKILLFF  L+LI
Sbjct: 2   KIKILLFFTILALI 15


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 85  HLSFFLSRLRVVIFFLFCCYWRIGVIL 5
           +++  + RL++ IFFL      IG+++
Sbjct: 473 YVAMVIDRLQLYIFFLVTTAGTIGILM 499


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 73  FLSRLRVVIFFLFCCYWRI 17
           F   +R +I +  CC+W+I
Sbjct: 475 FYDGIRDMIGYYPCCWWKI 493



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 56  SCYFFFVLLLL 24
           SC FFF+L+L+
Sbjct: 377 SCLFFFMLILI 387


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 73  FLSRLRVVIFFLFCCYWRI 17
           F   +R +I +  CC+W+I
Sbjct: 528 FYDGIRDMIGYYPCCWWKI 546



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 56  SCYFFFVLLLL 24
           SC FFF+L+L+
Sbjct: 430 SCLFFFMLILI 440


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 227 LSLICS*KYNNRVAVYFKLTKDRLLYILYILFSMI 123
           LSL+C+    N++AV+       +  +L IL S I
Sbjct: 64  LSLVCADTRLNKLAVFIVAGAVGVFSVLTILISYI 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,542
Number of Sequences: 438
Number of extensions: 3421
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)