Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O19
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 148 5e-37
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 128 5e-31
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 71 1e-13
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 69 7e-13
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 67 2e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 67 2e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 67 2e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 66 4e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 66 4e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 65 7e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 6e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 58 8e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 58 1e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 2e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 54 2e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 50 3e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 48 1e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 46 6e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 42 7e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 9e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 40 2e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 40 2e-04
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 40 4e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 38 0.001
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.002
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.002
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 34 0.014
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.033
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 33 0.043
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 32 0.057
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 30 0.23
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 28 1.2
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 6.5
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 25 8.6
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 25 8.6
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 8.6
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 8.6
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 148 bits (359), Expect = 5e-37
Identities = 70/114 (61%), Positives = 84/114 (73%)
Frame = +3
Query: 12 TRRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTN 191
T RDFTVS+MHGDMDQ +R+ +M +FRTGSSR+LITTDLLARGIDVQQVS VINYDLP N
Sbjct: 279 TERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPAN 338
Query: 192 RENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISEMPSDVANLI 353
RENY NFVT D R +++IE+FY+T I EMP ++A+LI
Sbjct: 339 RENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 128 bits (310), Expect = 5e-31
Identities = 60/111 (54%), Positives = 77/111 (69%)
Frame = +3
Query: 21 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNREN 200
+FTV++MHG+M Q+ER+ IM+ FR G+SRVLI TD+ ARGIDVQQVS VINYDLP NREN
Sbjct: 284 NFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANREN 343
Query: 201 YXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISEMPSDVANLI 353
Y NFVT D R L+DIE++Y T I EMP ++ +++
Sbjct: 344 YIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 70.9 bits (166), Expect = 1e-13
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Frame = +3
Query: 27 TVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNR---- 194
TV+ + G+++ +R+ IM FR G+S+VL+TT+++ARGIDV QV+ V+NYD+P ++
Sbjct: 378 TVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRP 437
Query: 195 --ENYXXXXXXXXXXXXXXXXXNFVTEADR-RALKDIEEFYHTSISEMPSD 338
+ Y NFV + + I+E++ I+ +P+D
Sbjct: 438 DPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 488
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 68.5 bits (160), Expect = 7e-13
Identities = 32/105 (30%), Positives = 55/105 (52%)
Frame = +3
Query: 21 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNREN 200
+F +++HGD QRERE + FR+G + +++ T + +RG+D+ V+ VINYDLPT+ ++
Sbjct: 454 NFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDD 513
Query: 201 YXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISEMPS 335
Y F ++ K++ E + E PS
Sbjct: 514 YVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPS 558
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 66.9 bits (156), Expect = 2e-12
Identities = 31/112 (27%), Positives = 55/112 (49%)
Frame = +3
Query: 15 RRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNR 194
+R +T +++HG DQ +R+ + ++ G VLI T ++ARG+DV+ + V+NYD P +
Sbjct: 690 KRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHM 749
Query: 195 ENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISEMPSDVANL 350
E+Y F+T + DI + S +P ++ L
Sbjct: 750 EDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTL 801
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 66.9 bits (156), Expect = 2e-12
Identities = 36/100 (36%), Positives = 47/100 (47%)
Frame = +3
Query: 42 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 221
H M Q R + FR G R L+ +DLL RGID+Q V+ VIN+D P N E Y
Sbjct: 312 HAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGR 371
Query: 222 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISEMPSDV 341
+F++ ADR L IE T I +P +
Sbjct: 372 SGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSI 411
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 66.9 bits (156), Expect = 2e-12
Identities = 27/56 (48%), Positives = 41/56 (73%)
Frame = +3
Query: 36 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 203
A+HGD Q ER+ ++ +FRTG S +++ TD+ +RGIDV+ ++ V NYD P N E+Y
Sbjct: 398 AIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDY 453
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 66.1 bits (154), Expect = 4e-12
Identities = 38/107 (35%), Positives = 52/107 (48%)
Frame = +3
Query: 30 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXX 209
V +HG++ Q +RE + +FR G VLI TDLLARGID V VIN+D P + +Y
Sbjct: 315 VGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
Query: 210 XXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISEMPSDVANL 350
F T+ D +K I +S E+P+ V L
Sbjct: 375 RIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMAL 421
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 66.1 bits (154), Expect = 4e-12
Identities = 32/102 (31%), Positives = 55/102 (53%)
Frame = +3
Query: 21 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNREN 200
+ V+ +H +M QRER + +FR ++++L+ TD+ +RG+D+ V VIN+DLP + ++
Sbjct: 282 ELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDD 341
Query: 201 YXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISE 326
Y + VTE D + IE+ T +SE
Sbjct: 342 YIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTKLSE 383
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 65.3 bits (152), Expect = 7e-12
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +3
Query: 21 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNREN 200
+F +HG + Q ER + F+ R+ + TD+ RGID+++V+ VINYD+P + ++
Sbjct: 319 NFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDS 378
Query: 201 YXXXXXXXXXXXXXXXXXNF-VTEADRRALKDIEEFYHTSISEMPSDV 341
Y F +E D + L I+E + +I+E+P ++
Sbjct: 379 YLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEI 426
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 58.8 bits (136), Expect = 6e-10
Identities = 30/105 (28%), Positives = 47/105 (44%)
Frame = +3
Query: 24 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 203
F+ +HG + Q R + +F++G+ L+ TD+ ARG+D+ V VINYD+PT+ + Y
Sbjct: 310 FSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAY 369
Query: 204 XXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISEMPSD 338
VT+ D IE + E D
Sbjct: 370 IHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATIGKKMQEYEID 414
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 58.4 bits (135), Expect = 8e-10
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = +3
Query: 39 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXX 218
+HG + Q +R + FR G L+ TD+ +RGID++ + VINY+ P E Y
Sbjct: 534 IHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVG 593
Query: 219 XXXXXXXXXXXXNFVTEADRRALKDI 296
E DR+ LK +
Sbjct: 594 RTARAGRSGRAITLAGEGDRKVLKGV 619
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 58.0 bits (134), Expect = 1e-09
Identities = 29/105 (27%), Positives = 46/105 (43%)
Frame = +3
Query: 18 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRE 197
R + V +HGDM Q R + F++G VL+ TD+ ARG+D+ +V VIN P E
Sbjct: 439 RKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIE 498
Query: 198 NYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISEMP 332
+Y F T D+ ++ + ++P
Sbjct: 499 DYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIP 543
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +3
Query: 39 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXX 218
+HG Q +RE + Q R ++ +L+ TD+ RGID+ VS V+NY++ + E+Y
Sbjct: 546 LHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIG 605
Query: 219 XXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSI-SEMPSDVAN 347
F+ D D+ S + +P ++ N
Sbjct: 606 RTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRN 649
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/94 (28%), Positives = 46/94 (48%)
Frame = +3
Query: 24 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 203
++VS ++G +DQ R + FR G + +L+ TD+ +RGID+ ++ VINYD P + +
Sbjct: 371 YSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVF 430
Query: 204 XXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEF 305
+ V D L D++ F
Sbjct: 431 VHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLF 464
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 50.0 bits (114), Expect = 3e-07
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = +3
Query: 18 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRE 197
+ F+ + + ER+ I+ +F TG +L+ +DL+ARGIDV VINYD P +
Sbjct: 460 QSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVR 519
Query: 198 NY 203
+Y
Sbjct: 520 SY 521
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +3
Query: 39 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 203
+H +DQ++R + +F+ VL+ TD+ ARGID+ V+ VI+Y +P + Y
Sbjct: 419 LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMY 473
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 45.6 bits (103), Expect = 6e-06
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Frame = +3
Query: 30 VSAMHGDMDQREREVIMRQFRTGS---SRVLITTDLLARGIDVQQVSCVINYDLPTNREN 200
V +HG + Q+ R + F + S +L+ TD+ ARG+D+ V V+ YD P + ++
Sbjct: 470 VYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDD 529
Query: 201 YXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISEMPSDVANLI 353
Y F+ + + ++ +I E P+ + L+
Sbjct: 530 YLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILEQPNGPSGLL 580
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 41.9 bits (94), Expect = 7e-05
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 21 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNREN 200
D V +HG Q+ R +F +L+ T++ ARG+D+ V ++ YD P + +
Sbjct: 360 DLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRD 419
Query: 201 Y 203
Y
Sbjct: 420 Y 420
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.5 bits (93), Expect = 9e-05
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 24 FTVSAMHGDMDQREREVIMRQFRTGSSR-VLITTDLLARGIDVQQVSCVINYDLPTNREN 200
F + A+HG Q R +F+ + + VL TTD+ +RG+D+ V V+ D P + ++
Sbjct: 283 FEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKS 342
Query: 201 Y 203
+
Sbjct: 343 F 343
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 39 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 203
+H + +R I FR S +L TD++ARG+D ++ V+ P+N ++Y
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDY 377
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 39 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 203
+HG Q R + +F + VL TD++ARG+D V VI D P + + Y
Sbjct: 315 LHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTY 369
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 15 RRDFTVSAMH--GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPT 188
R D+ + A H +++ ER+ I ++++GS ++++ T G+D V VI++ P
Sbjct: 763 RNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPK 822
Query: 189 NRENY 203
+ E Y
Sbjct: 823 SLEGY 827
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 37.9 bits (84), Expect = 0.001
Identities = 12/25 (48%), Positives = 22/25 (88%)
Frame = +3
Query: 129 LARGIDVQQVSCVINYDLPTNRENY 203
+ARG+D + V+CV+N+D+P+N ++Y
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSY 410
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 30 VSAMHGDMDQREREVIMRQFR--TGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 203
V+ GD+ ER++ FR G +R++I T GI+ V V++Y LP + +Y
Sbjct: 1446 VTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDY 1505
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 30 VSAMHGDMDQREREVIMRQFR--TGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 203
V+ GD+ ER++ FR G +R++I T GI+ V V++Y LP + +Y
Sbjct: 1446 VTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDY 1505
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.014
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 36 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNREN 200
A+ G+ + ERE +++ FR VL+ +L G D+ + C++ PT+ N
Sbjct: 294 ALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM-IARPTSSPN 347
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.1 bits (72), Expect = 0.033
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 51 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 179
M Q+ + ++QF+ G LI T + G+D+ +V +I YD
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYD 518
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 32.7 bits (71), Expect = 0.043
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 33 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 179
SA M+Q +++ + QFR G L+ T + G+D+ +I YD
Sbjct: 509 SAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYD 557
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 32.3 bits (70), Expect = 0.057
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 51 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 182
M R ++ + +F+TG VLI T + GIDV + VI +++
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNI 450
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 30.3 bits (65), Expect = 0.23
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 431 HTHTHLINIAIERRTQSIDQINVDT-SDEVGHITGHFRNTSVIELLNILERSPVRFRDKV 255
H + N + + T I+ V + SDE HI R +EL +LER P+ R+++
Sbjct: 1033 HNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIP--VREEEKVELAKLLERVPIPIRERL 1090
Query: 254 D 252
D
Sbjct: 1091 D 1091
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = -1
Query: 401 IERRTQSIDQINVDTSDEVGHITGHFRNT-----SVIELLN---ILERSPVRFRDKVDGN 246
IE R ++ D + TS+E H + +V+E N ++ SP+ + G
Sbjct: 46 IEERIKACDA-GIQTSEEQKKELEHTMQSLEMIINVLEKANEKPVITNSPLTRSRRNRGT 104
Query: 245 SFTAETTTSSDSMNVVFAI 189
SFTA T T + M+V F +
Sbjct: 105 SFTANTVTFTPGMSVAFKL 123
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 343 PTSSEVSTFIWSILCVLRSIA 405
PTS S WSI+C LR +A
Sbjct: 1050 PTSGLDSQSAWSIVCFLRKLA 1070
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 334 VMWPTSSEVSTFIWSILCVLRSIAIFIRCVCVCIKGE 444
+++PTS +S +W+ L S+AI + + GE
Sbjct: 107 LIYPTSYTISNILWTFSIWLESVAILPQLFMLQRSGE 143
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 368 NVDTSDEVGHITGHFRNTSVIELLNILERSPVR 270
+ D +VGH+ + + IE+L I E PVR
Sbjct: 43 SADGGFDVGHLQLDAKKSDAIEILPISEFDPVR 75
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.0 bits (52), Expect = 8.6
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 247 LPSTLSRKRTGERSRILRSSITLVFRKCPVMWPTSSEVSTFIWSILCVLRSIAIFIRCVC 426
LP+TLS G + I R S L++ P + +STF++ L ++ + CV
Sbjct: 440 LPATLS---VGIANSIARLSRALIYTTSPESIHNAGCLSTFVFDKTGTLTENSVQLSCVY 496
Query: 427 V 429
V
Sbjct: 497 V 497
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 274 TGERSRILRSSITLVFRKCPVMWPTSSEVSTFIWSIL 384
TGE S+I +++ V K P M ++ + FI++++
Sbjct: 547 TGEESKIRMNAVRNVSVKAPSMQKVTNRIVIFIFALV 583
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,199
Number of Sequences: 5004
Number of extensions: 40858
Number of successful extensions: 119
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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