Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O17
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    27   2.8  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   2.8  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    26   3.7  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   6.5  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   6.5  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   6.5  

>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 195 KYYHIDRTFARRKRKWRVLHLKEIWTGSPWRSCLLKD 305
           +YY+  +   RRK K R L L E    +P   CLL D
Sbjct: 309 RYYYCRQRSVRRKEKTRQLLLYE--RSAPKNQCLLSD 343


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 605 FESEMSTIVHLVKSCEKSDAEVNNLPR 525
           F S  ++   +++SC+ S+  VN+LPR
Sbjct: 40  FPSTNASYAPVIRSCDSSEIMVNSLPR 66


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 237 KWRVLHLKEIWTGSPWRSCL 296
           KW    ++E +TG PW S L
Sbjct: 336 KWYAYLMREAYTGQPWTSTL 355


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 254 LKRNLDWESMAQLPAKRRRCSPFAASSSTSPGIK-VSETKPSIFGESVSAPVKMTPERMA 430
           +KR ++ +    L  K +     A SSS   G K +SE + S F   +  P  +TP+  +
Sbjct: 5   IKREIEIKRAKLLLLKNKENCTDAVSSSNKEGPKQISEDQLSNFLCKILKPTNLTPQTYS 64

Query: 431 QE 436
            E
Sbjct: 65  LE 66


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +3

Query: 189 SHKYYHIDRTFARRKRKWRVLHLKEIWTGSPWRSCLLKDEDALHLRQVQALVLE 350
           S+ + H D+   +   +  V   +  WTG P +  L KD   +  +++++L  E
Sbjct: 177 SNLFGHADKNVRKEASRLTVNIYR--WTGDPLKDLLFKDLRPVQTKELESLFAE 228


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 347 GIKVSETKPSIFGESVSAPVKMTPERMAQEICDEIKRLQRRRQL 478
           GI V E    +  + V  PV+ +PE  A++  DE  ++++ ++L
Sbjct: 493 GILVVEQAYIVEEQEVEEPVETSPEEEAEKKTDEPVKMRKVKKL 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,078
Number of Sequences: 5004
Number of extensions: 46857
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)