Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O17
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0084 + 657846-658538,660652-661920                               31   0.95 
07_01_0878 + 7288950-7289231                                           29   2.9  
03_06_0721 - 35742380-35742736,35743206-35743398,35743497-357435...    29   3.8  
01_06_0742 - 31611005-31611843,31611930-31612092,31613463-316135...    28   5.1  
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557...    28   6.7  
06_02_0282 + 13720419-13720985                                         27   8.9  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    27   8.9  
03_02_0354 + 7760124-7761407,7762802-7762858                           27   8.9  

>07_01_0084 + 657846-658538,660652-661920
          Length = 653

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -2

Query: 478 QLAASLKPLDLVTYLLCHALWGHFH 404
           Q+  +L+PL LVTY +  ALWGH H
Sbjct: 461 QMLQNLEPL-LVTYKVTLALWGHVH 484


>07_01_0878 + 7288950-7289231
          Length = 93

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +2

Query: 296 AKRRRCSPFAASSSTSPGIKVSETKPSIFGESVSAPVKMTPERMAQEICDEIKRLQRRR 472
           A RR   PF A+    PG +  + K      + + PV    + + Q     + RL R R
Sbjct: 18  AARRSVQPFGAARPRQPGSRHGDLKAGAGARAAAFPVSAQAQMVVQRELAAVGRLSRCR 76


>03_06_0721 -
           35742380-35742736,35743206-35743398,35743497-35743552,
           35745951-35746727
          Length = 460

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 359 SETKPSIFGESVSAPVKMTPERMAQEICDEIKRLQRRRQLRVA 487
           +ET    FG+ ++A  KM+  R    I +  K +QR  ++ +A
Sbjct: 387 AETAKGSFGDELTAEAKMSTRRALSSIRNNFKEIQRSLEIWLA 429


>01_06_0742 -
           31611005-31611843,31611930-31612092,31613463-31613538,
           31613615-31613731,31613852-31614016,31614100-31614190,
           31614824-31614908,31615013-31615195,31615748-31615996
          Length = 655

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +3

Query: 201 YHIDRTFARRKRKWRVLHLKEI----WTGSPWRSCLLKDEDA 314
           +H +      +R   +  + E+    W GS WRS L++ EDA
Sbjct: 287 FHFESEDVNERRSGMIAGVSEVDPIRWPGSKWRSLLVRWEDA 328


>11_08_0102 -
           28354880-28355056,28355159-28355376,28355634-28355712,
           28356451-28356519,28356602-28356681,28356818-28356925,
           28357103-28357169,28357894-28357959,28358042-28358119,
           28358198-28358250,28359542-28359575,28359851-28359865,
           28360082-28360109,28360628-28360716,28361688-28361810,
           28362192-28362296,28362381-28362485,28362924-28363139,
           28364656-28364845,28365193-28365418,28366096-28366162
          Length = 730

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 504 HAPRLVVAREIVHLRITLLTTLHKM 578
           HA   V++RE VH+R+TLL  L  M
Sbjct: 360 HADMDVISREKVHMRLTLLPPLFLM 384


>06_02_0282 + 13720419-13720985
          Length = 188

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 264 IWTGSPWRSCLLKDEDALHLRQVQ 335
           +W GS WR C   DE A+   ++Q
Sbjct: 84  MWMGSRWRRCRFVDESAMAAPRLQ 107


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 299 KRRRCSPFAASSSTSPGIKVSETKPSIFGESVSAPVKMTPER 424
           K+++ +P A+ +  +PG+K+ +  P+ F   V  P+   P R
Sbjct: 584 KQKQETPPASHTFPTPGVKIPDANPAKFIPDVVRPMVDKPSR 625


>03_02_0354 + 7760124-7761407,7762802-7762858
          Length = 446

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 383 GESVSAPVKMTPERMAQEI 439
           GES  APVK  P R+ QE+
Sbjct: 26  GESTGAPVKYLPARLRQEV 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,126
Number of Sequences: 37544
Number of extensions: 303097
Number of successful extensions: 779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)