Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O17
(611 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005051-1|AAH05051.1| 203|Homo sapiens chromosome 6 open readi... 42 0.002
BC003042-1|AAH03042.1| 203|Homo sapiens chromosome 6 open readi... 42 0.002
BC000764-1|AAH00764.1| 203|Homo sapiens chromosome 6 open readi... 42 0.002
AL133211-3|CAI21541.1| 203|Homo sapiens protein ( Human DNA seq... 42 0.002
AK222701-1|BAD96421.1| 203|Homo sapiens hypothetical protein FL... 42 0.002
AK001204-1|BAA91551.1| 135|Homo sapiens protein ( Homo sapiens ... 42 0.002
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 30 5.6
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 30 5.6
D86983-1|BAA13219.1| 1496|Homo sapiens KIAA0230 protein. 30 7.4
AF200348-1|AAF06354.1| 1496|Homo sapiens melanoma-associated ant... 30 7.4
>BC005051-1|AAH05051.1| 203|Homo sapiens chromosome 6 open reading
frame 166 protein.
Length = 203
Score = 41.9 bits (94), Expect = 0.002
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 20/103 (19%)
Frame = +2
Query: 239 MAC-ATLKRNLDWESMAQLPA--KRRRCSPFAA--SSSTSPGIKVSETKPSIFGESVSAP 403
MAC ATLKR LD++ + PA KRRRC+P +A S++ SP + T S F + ++P
Sbjct: 1 MACGATLKRTLDFDPLLS-PASPKRRRCAPLSAPTSAAASPLSAAAATAAS-FSAAAASP 58
Query: 404 VK---------------MTPERMAQEICDEIKRLQRRRQLRVA 487
K +T E++ I E KR+Q+RR L +
Sbjct: 59 QKYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETS 101
>BC003042-1|AAH03042.1| 203|Homo sapiens chromosome 6 open reading
frame 166 protein.
Length = 203
Score = 41.9 bits (94), Expect = 0.002
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 20/103 (19%)
Frame = +2
Query: 239 MAC-ATLKRNLDWESMAQLPA--KRRRCSPFAA--SSSTSPGIKVSETKPSIFGESVSAP 403
MAC ATLKR LD++ + PA KRRRC+P +A S++ SP + T S F + ++P
Sbjct: 1 MACGATLKRTLDFDPLLS-PASPKRRRCAPLSAPTSAAASPLSAAAATAAS-FSAAAASP 58
Query: 404 VK---------------MTPERMAQEICDEIKRLQRRRQLRVA 487
K +T E++ I E KR+Q+RR L +
Sbjct: 59 QKYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETS 101
>BC000764-1|AAH00764.1| 203|Homo sapiens chromosome 6 open reading
frame 166 protein.
Length = 203
Score = 41.9 bits (94), Expect = 0.002
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 20/103 (19%)
Frame = +2
Query: 239 MAC-ATLKRNLDWESMAQLPA--KRRRCSPFAA--SSSTSPGIKVSETKPSIFGESVSAP 403
MAC ATLKR LD++ + PA KRRRC+P +A S++ SP + T S F + ++P
Sbjct: 1 MACGATLKRTLDFDPLLS-PASPKRRRCAPLSAPTSAAASPLSAAAATAAS-FSAAAASP 58
Query: 404 VK---------------MTPERMAQEICDEIKRLQRRRQLRVA 487
K +T E++ I E KR+Q+RR L +
Sbjct: 59 QKYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETS 101
>AL133211-3|CAI21541.1| 203|Homo sapiens protein ( Human DNA
sequence from clone RP3-486L4 on chromosome 6q14.3-16.1
Contains the 3' end of the ORC3L gene for origin
recognition ).
Length = 203
Score = 41.9 bits (94), Expect = 0.002
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 20/103 (19%)
Frame = +2
Query: 239 MAC-ATLKRNLDWESMAQLPA--KRRRCSPFAA--SSSTSPGIKVSETKPSIFGESVSAP 403
MAC ATLKR LD++ + PA KRRRC+P +A S++ SP + T S F + ++P
Sbjct: 1 MACGATLKRTLDFDPLLS-PASPKRRRCAPLSAPTSAAASPLSAAAATAAS-FSAAAASP 58
Query: 404 VK---------------MTPERMAQEICDEIKRLQRRRQLRVA 487
K +T E++ I E KR+Q+RR L +
Sbjct: 59 QKYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETS 101
>AK222701-1|BAD96421.1| 203|Homo sapiens hypothetical protein
FLJ10342 variant protein.
Length = 203
Score = 41.9 bits (94), Expect = 0.002
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 20/103 (19%)
Frame = +2
Query: 239 MAC-ATLKRNLDWESMAQLPA--KRRRCSPFAA--SSSTSPGIKVSETKPSIFGESVSAP 403
MAC ATLKR LD++ + PA KRRRC+P +A S++ SP + T S F + ++P
Sbjct: 1 MACGATLKRTLDFDPLLS-PASPKRRRCAPLSAPTSAAASPLSAAAATAAS-FSAAAASP 58
Query: 404 VK---------------MTPERMAQEICDEIKRLQRRRQLRVA 487
K +T E++ I E KR+Q+RR L +
Sbjct: 59 QKYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETS 101
>AK001204-1|BAA91551.1| 135|Homo sapiens protein ( Homo sapiens
cDNA FLJ10342 fis, clone NT2RM2000837. ).
Length = 135
Score = 41.9 bits (94), Expect = 0.002
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 20/103 (19%)
Frame = +2
Query: 239 MAC-ATLKRNLDWESMAQLPA--KRRRCSPFAA--SSSTSPGIKVSETKPSIFGESVSAP 403
MAC ATLKR LD++ + PA KRRRC+P +A S++ SP + T S F + ++P
Sbjct: 1 MACGATLKRTLDFDPLLS-PASPKRRRCAPLSAPTSAAASPLSAAAATAAS-FSAAAASP 58
Query: 404 VK---------------MTPERMAQEICDEIKRLQRRRQLRVA 487
K +T E++ I E KR+Q+RR L +
Sbjct: 59 QKYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETS 101
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 30.3 bits (65), Expect = 5.6
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 418 RAHGTGDM*RDQAASATPPTACGEWSSG--FMLLV*W*RGRLFTSASLFS 561
R+ GT R +S T T+C WSSG W G FTS S +S
Sbjct: 31 RSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWS 80
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 30.3 bits (65), Expect = 5.6
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 418 RAHGTGDM*RDQAASATPPTACGEWSSG--FMLLV*W*RGRLFTSASLFS 561
R+ GT R +S T T+C WSSG W G FTS S +S
Sbjct: 31 RSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWS 80
>D86983-1|BAA13219.1| 1496|Homo sapiens KIAA0230 protein.
Length = 1496
Score = 29.9 bits (64), Expect = 7.4
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -1
Query: 512 RSMKPLLHSPHAVGGVAEAA*SRHISPVPCALGSFSRVH*RTLQILMVSFQTLLFQD 342
RS KPLL P A G E + SP+PC L R + Q+ + S TL F++
Sbjct: 960 RSGKPLL--PFATGPPTECMRDENESPIPCFLAGDHRAN---EQLGLTSMHTLWFRE 1011
>AF200348-1|AAF06354.1| 1496|Homo sapiens melanoma-associated antigen
MG50 protein.
Length = 1496
Score = 29.9 bits (64), Expect = 7.4
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -1
Query: 512 RSMKPLLHSPHAVGGVAEAA*SRHISPVPCALGSFSRVH*RTLQILMVSFQTLLFQD 342
RS KPLL P A G E + SP+PC L R + Q+ + S TL F++
Sbjct: 960 RSGKPLL--PFATGPPTECMRDENESPIPCFLAGDHRAN---EQLGLTSMHTLWFRE 1011
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,681,143
Number of Sequences: 237096
Number of extensions: 1592772
Number of successful extensions: 3549
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3535
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -