Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O17
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    29   2.0  
AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z92837-5|CAB07403.1|  528|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U40802-10|AAK19008.2|  374|Caenorhabditis elegans Hypothetical p...    28   6.0  
AL031621-8|CAA20936.1|  528|Caenorhabditis elegans Hypothetical ...    28   6.0  

>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +2

Query: 305 RRCSPFAASSSTSPGIKVSETKPSIFGESVSAPVKMTPER 424
           RR SPF++S ST+P IK S    S F ES+   V  +PER
Sbjct: 220 RRRSPFSSSKSTAP-IK-SRHYRSRFSESLEDNVFRSPER 257


>AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical
           protein T05A8.2 protein.
          Length = 221

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 457 PLDLVTYLLCHALWGHFHGCTNGLSK 380
           P+ +V+Y+  +++W HFH  T+ +S+
Sbjct: 27  PVVVVSYIAVNSVWNHFHDDTSEVSR 52


>Z92837-5|CAB07403.1|  528|Caenorhabditis elegans Hypothetical
           protein F28H6.1a protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 356 VSETKPSIFG-ESVSAPVKMTPERMAQEI--CDEIKRLQ 463
           +SET  S F  E  S PV++TP R  +E+   DE + LQ
Sbjct: 459 MSETDTSFFDREFTSMPVQLTPPRRGEELPTVDEEEELQ 497


>U40802-10|AAK19008.2|  374|Caenorhabditis elegans Hypothetical
           protein ZC477.2 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 219 TSYLYDNICDFSCCHKPSETWKYYFNLIKSSTKXXXXXXXXXXXXXXXLNLKIICRS 49
           T  L+ +  DF   H P+   KY FN+I++ +                 NLK+I RS
Sbjct: 242 TDLLFADTLDFDLIHIPTRKPKYEFNVIRNMS--VMYNEAAVTQFCEKFNLKLIIRS 296


>AL031621-8|CAA20936.1|  528|Caenorhabditis elegans Hypothetical
           protein F28H6.1a protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 356 VSETKPSIFG-ESVSAPVKMTPERMAQEI--CDEIKRLQ 463
           +SET  S F  E  S PV++TP R  +E+   DE + LQ
Sbjct: 459 MSETDTSFFDREFTSMPVQLTPPRRGEELPTVDEEEELQ 497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,029,966
Number of Sequences: 27780
Number of extensions: 259422
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)