Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O16
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.70
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 28 0.93
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.2
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 2.1
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 27 2.8
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 3.7
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.9
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 25 6.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 6.5
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 6.5
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.5
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 25 6.5
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 8.6
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 111 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 218
+ V D C+R D+ +P I +YQ +P + AD+
Sbjct: 77 MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 28.3 bits (60), Expect = 0.93
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = -2
Query: 310 SSRLSTNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQ 143
S+ ++TN V + I++ S TT S+ + +S +S M+ SAS
Sbjct: 410 STTINTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGS 469
Query: 142 RTQASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 38
+SGS++GSS +SA+ + L+R + LA S
Sbjct: 470 SAHSSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 148 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACL 5
V+R + SGS+ G S SA A S SLA + P+ A C+
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERATPEVCV 170
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +1
Query: 286 HN*WITLKSKQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTG 465
H W L K + + HTS + + + D+ S K DD++R +PF T
Sbjct: 443 HYNWKLLDIKALISYHFAIPVHTSTFVFASS-ERDVSF-SPKTVRDDQKRLFELPFTCTF 500
Query: 466 CDTFDKYEKNV 498
D + K NV
Sbjct: 501 IDVYAKESGNV 511
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 609 ENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFV-ECITSSF 457
E +F++ I ++F +++I F+ C H V N LF+F IT+SF
Sbjct: 17 EVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 581 NGRSRSDFSLKTILDKPSFILSV 513
N R++++ SLK + +PSF+L+V
Sbjct: 16 NTRTKAELSLKQLEKEPSFVLAV 38
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 160 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 35
L S +R + ++ PVR S A R +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 228 FETTQSNEQSYKDLVMPLITQLVDNLE 308
FE +Q N S K + ++TQL NLE
Sbjct: 362 FEESQGNIASAKAIYQSILTQLPGNLE 388
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -1
Query: 200 WHFELINVSDGVRLVRVGAAHASVRQ 123
W +LIN++DG+ +++ H+ Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 127 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 23
GS + PV+ S YP+A Q S+ +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 25.4 bits (53), Expect = 6.5
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -1
Query: 599 LTAPAR-NGRSRSDFSLKTILDKPSFILSVSIKSITFFSYLS-------NVSHPVLTKG 447
+T P R NG S F+L T PS+ LS + F Y+S + SHP ++ G
Sbjct: 1 MTGPFRYNGGSVRSFALTTNFSFPSYDLSFNETEHGVFCYVSRPLTKERSCSHPYISLG 59
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 295 WITLKSKQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERY 438
+IT SK ++ Y+ + ++ PI D + LKS + DDK Y
Sbjct: 111 FITATSKMVSGDATYVQLNNEEWGIPINIDLNRMLKSIRDMTDDKVIY 158
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 8.6
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 388 DLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSL 567
DLKL++ KL K ER ++ +T EKN+ + + ++ + L+ K
Sbjct: 326 DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEA 385
Query: 568 L----DLPFRAGAVK 600
L D FRA +K
Sbjct: 386 LISHYDDDFRAKELK 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,855
Number of Sequences: 5004
Number of extensions: 46648
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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