Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O16
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 29 2.2
08_02_1557 + 27867977-27869134 29 2.9
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940... 28 5.1
08_01_0303 + 2493388-2493954 28 6.7
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 28 6.7
01_06_0240 + 27794741-27795466 28 6.7
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 27 8.9
11_05_0096 - 19029632-19029937,19030376-19031197 27 8.9
07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997... 27 8.9
04_04_0236 + 23825368-23825763,23826229-23828667 27 8.9
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +1
Query: 394 KLKSSKLHFDDKERYERM-PFVKTGCDTFDKYEKNVIDFMD---TLKIKLGL----SNIV 549
+LKS KLH +D+E ++ PFVK + ++V+ L IKL L N
Sbjct: 1739 RLKSIKLHKNDEELLSKLDPFVKLLAECLSSKHESVLSISFRCLALLIKLPLPSLKDNAN 1798
Query: 550 LSEKSLLDLPFRAG 591
L + L+D+ RAG
Sbjct: 1799 LIKNVLMDIAQRAG 1812
>08_02_1557 + 27867977-27869134
Length = 385
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 103 VRASAAYPLARSQAWCKSLAASVP 32
V AS+AYP Q+ CKS AAS P
Sbjct: 218 VAASSAYPYRARQSSCKSSAASSP 241
>01_07_0131 +
41292800-41293400,41293522-41293649,41293759-41294019,
41294154-41294416,41294507-41294831
Length = 525
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 413 YISTTKSATSVCLLSKLDVIHSTNMKRTLSTLW--IHSK*NLVCP 541
YIS+T T V L LD +H++ +K LW H NL+ P
Sbjct: 341 YISSTLFYTDVTYLEFLDRVHTSELKLRAQGLWEVPHPWLNLLIP 385
>08_01_0303 + 2493388-2493954
Length = 188
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 15 CIHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRC 146
C HA+S AA +LH+ C R + L T L A VRC
Sbjct: 15 CHHAISRRSAAVELHR-CSRRRRPSPLTTTVALTRRRSPAAVRC 57
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 343 AGHTSKYPYPILYDTDLKLKSSKLHFDD-KERYERMPFVKTGCDTFDKYEKNVI 501
AG S P I+ D +++KLHFDD +RY + TF+K + ++
Sbjct: 300 AGRLSPKPDIIVQRYDPTYEATKLHFDDVAQRYGHPIIILNLTKTFEKRPREMM 353
>01_06_0240 + 27794741-27795466
Length = 241
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 111 LPAVLPDACVRCTDADKPHAIGDV 182
+PA P A VRCT A KP A G +
Sbjct: 24 IPAATPSAIVRCTAAPKP-ATGSI 46
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 570 QKRLFTQNNIGQT-KFYFECIHKVDNVLFIFVECITSSFDKRHTL 439
+++++ Q+ + T Y C+ +D + + V C+ + DKR T+
Sbjct: 631 RRKMYDQDMLSSTDSLYPYCMECLDRMAAVAVRCLKNKVDKRPTM 675
>11_05_0096 - 19029632-19029937,19030376-19031197
Length = 375
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 48 KDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGD 179
+ L D+ G+ A+A + A PD ++CT D PH + D
Sbjct: 206 RGLRSLVDVGGGHGAVAKA--IAAAFPD--IKCTVMDLPHVVAD 245
>07_03_1361 -
25998873-25999223,25999311-25999461,25999546-25999783,
25999898-26000108,26000210-26000340,26000909-26001037,
26001329-26002130
Length = 670
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 160 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWC 56
L+A+ T A+ G+ + YP+ S AWC
Sbjct: 165 LNATADYTAAAARRFGTGEISFDPTYPVIYSMAWC 199
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 337 YLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNV 498
Y+ T+ + +DT +KL+S + +DD +++ P V +G F++ NV
Sbjct: 588 YITPETTIKTFIEQFDTAMKLRSDREAYDDFRSFQQRPQVLSGL-LFEEQFANV 640
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,799,597
Number of Sequences: 37544
Number of extensions: 296167
Number of successful extensions: 896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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