Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O16
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92826-8|CAI79117.1|  325|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81475-12|CAI79149.1|  325|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    27   8.0  

>Z92826-8|CAI79117.1|  325|Caenorhabditis elegans Hypothetical
           protein C18D11.7 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 319 ITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFD 480
           I D K ++A    + P  I Y + +K+     HF   ER E  PF +   DT+D
Sbjct: 39  IKDRKFHIAAFFKETP-EIEYQSSVKIWFKDEHFSYYERSEPFPFEEKCEDTYD 91


>Z81475-12|CAI79149.1|  325|Caenorhabditis elegans Hypothetical
           protein C18D11.7 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 319 ITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFD 480
           I D K ++A    + P  I Y + +K+     HF   ER E  PF +   DT+D
Sbjct: 39  IKDRKFHIAAFFKETP-EIEYQSSVKIWFKDEHFSYYERSEPFPFEEKCEDTYD 91


>Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical
           protein M03C11.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 337 YLAGHTSKYPYPILYDTDL-KLKSSKLHFDDKERYERMPFVK 459
           Y+A   S  PYP  + TDL +  +S L FD ++R   +  +K
Sbjct: 242 YVAFRESSIPYPAHWPTDLIQFINSMLKFDKEKRLVGLEAIK 283


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +1

Query: 409 KLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSLLDLPF 582
           K+  + +E + + P +K   + F   +  + DFM +++ +  LS I    K + ++PF
Sbjct: 600 KIKQEIEETWSKYPELKKSLEKFRSNKMKLDDFMISVRTEKNLSQIGSIYKEVSNIPF 657


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,487,706
Number of Sequences: 27780
Number of extensions: 259927
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)