Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O15
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    38   0.001
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    29   0.31 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.41 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   0.94 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   0.94 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   1.2  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   2.9  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   3.8  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   5.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.7  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.7  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = -3

Query: 249 LRAVSAAAPLDGASFPPPNLDQAHPLT------PAKIKPTIRITPPAMSVPTLPSEPSAV 88
           LR  ++A P    S PPP+   A P+       P+ + P  +   P  S P+ PS PSAV
Sbjct: 137 LRPPTSAPPRP--SIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAV 194

Query: 87  VDVSEYCTPPAINNAKPMTLSVLPS 13
             +     PP ++ A     S  PS
Sbjct: 195 PPMPPKVPPPPLSQAPVANTSSRPS 219



 Score = 31.1 bits (67), Expect = 0.10
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = -3

Query: 252 GLRAVSAAAPLDGASFPPPNLDQAHPLTPAKIKPTIRITPPAMSVPTLPSE----PSAVV 85
           G  + SAA P   A  PP    +  P T A  +P+I    PA S P +PS+    PS++ 
Sbjct: 116 GKSSASAAPP--SAPAPPTPQSELRPPTSAPPRPSIPPPSPA-SAPPIPSKAPPIPSSLP 172

Query: 84  DVSEYCTPPAINNAKPMTLSVLPSKP 7
             ++   P     + P   S +P  P
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMP 198


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -3

Query: 210 SFPPPNLDQAHPLTPAKIKPTIRITPPAMSVPTLPSE-PSAVVDVSEYCTPPAINNAKPM 34
           + P PN+    P      +P + + PP    P+ PS+ P     + +   P A+ N    
Sbjct: 557 AMPHPNITSPSPSISVTQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPLPPGAMANVSAG 616

Query: 33  TLSVLPS 13
             SV  S
Sbjct: 617 PSSVRSS 623


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -3

Query: 201 PPNLDQAHPLTPAKIKPTIRITPPAMS----VPTLPSEPSAVVDVSEYCTPPAINNAKPM 34
           PP    A P  P +  P+    PP +S    V   P+ P A+   S    PP + NA   
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP-LGNASRT 412

Query: 33  TLSVLPSKPS 4
           +   +P+ PS
Sbjct: 413 STPPVPTPPS 422



 Score = 27.9 bits (59), Expect = 0.94
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -3

Query: 240 VSAAAPLDGASFPPPNLD-QAHPLTPAKIKPTIRITPPAMSVPTLPSEPSAVVDVSEYCT 64
           +S++  +     PPP +  ++ P  P     +   TPP   VPT PS P +         
Sbjct: 379 LSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP---VPTPPSLPPSAPPSLPPSA 435

Query: 63  PPAINNAKPMTLSVLPSKP 7
           PP++    P    + PS P
Sbjct: 436 PPSLPMGAPAAPPLPPSAP 454


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 22/64 (34%), Positives = 24/64 (37%)
 Frame = -3

Query: 228  APLDGASFPPPNLDQAHPLTPAKIKPTIRITPPAMSVPTLPSEPSAVVDVSEYCTPPAIN 49
            AP    S PP     A P  P    PT    PP MSVP  PS P           PP   
Sbjct: 1682 APAHPVSTPPVRPQSAAP--PQMSAPTP--PPPPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737

Query: 48   NAKP 37
            ++ P
Sbjct: 1738 SSAP 1741



 Score = 24.6 bits (51), Expect = 8.8
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -3

Query: 246  RAVSAAAPLDGASFPPPNLDQAHPLTPAKIKPTIRITPPAMSVPTLPSEPSAVVDVSEYC 67
            +   + AP++ A+  P     A  + P K    +    PA+S     S P AVV   ++ 
Sbjct: 1255 KGTPSPAPVNSATSTPVAAPTAQQIQPGKQASAVSSNVPAVSASI--STPPAVVPTVQHP 1312

Query: 66   TP 61
             P
Sbjct: 1313 QP 1314



 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 132  PAMSVPTLPSEPSAVVDVSEYCTPPAINNAKP 37
            P+++VP +PS PS   +      PPA +  +P
Sbjct: 1610 PSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQP 1641


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
 Frame = -3

Query: 219 DGASFPPPNLDQAHPLTPA-KIKPTIRITPPAMSVPTLPSEP--SAVVDVSEYCTPPAIN 49
           +  S P P +    P  P+   +P + + P A SVP  P+ P    V  V +    P + 
Sbjct: 600 EAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVP 659

Query: 48  NA----KPMTLSVLPSKPS 4
            A    +P    V+P  PS
Sbjct: 660 EAPSVPQPPAAPVVPEVPS 678



 Score = 27.5 bits (58), Expect = 1.2
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
 Frame = -3

Query: 219 DGASFPPPNLDQAHPLTPAKIKPTIR-ITPPAMSVPTLPSEPSA--VVDVSEYCTPPAIN 49
           +  S P P +    P  P+  +P +  + P A SVP  P  P A  V  V +    P + 
Sbjct: 570 EALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVP 629

Query: 48  NA----KPMTLSVLPSKPS 4
            A    +P    V+P  PS
Sbjct: 630 EAPSVPQPPAAPVVPEVPS 648



 Score = 25.8 bits (54), Expect = 3.8
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = -3

Query: 201 PPNLDQAHPLTPAKIKPTIRITPPAMSVPTLPSEPSAVVDVSEYCTPPAINNAKPMTLSV 22
           PP    A  +  A  +P   + P A SVP  P+ P           P A++  +P    V
Sbjct: 532 PPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP---------VVPEALSVPQPPVAPV 582

Query: 21  LPSKPS 4
            P  PS
Sbjct: 583 APEVPS 588


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -3

Query: 165 AKIKPTIRITPPAMSVPTLPSEPSAVVDVSEYCTPP--AINN------AKPMTLSVLPSK 10
           A+ KP +    P + +PTLP   +  +  S    PP  +IN+       +P ++S  PS 
Sbjct: 438 AENKPPVAQQSPPVLLPTLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVSPQPSS 497

Query: 9   PS 4
           P+
Sbjct: 498 PT 499


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 213 ASFPPPNLDQAHPLTPAKIKPTIRITPPAMSVPTLP 106
           AS   PN   A P TP    P +    P  ++ TLP
Sbjct: 171 ASVSSPNSHNAVPFTPHAFVPPVNNASPLPALNTLP 206


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 16  GKYTKRHWFGVINRRRRAV 72
           G+Y KR W+  +NR  R++
Sbjct: 278 GQYPKRDWYSFVNRDNRSL 296


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
 Frame = -3

Query: 243 AVSAAAPLDGASFP--PPNLDQAHPLTPAKIKPTI-------RITPPAMSVPTLPS 103
           A S+   L+G  +   P  L  AH  TP    PT+         TPP M +PT  S
Sbjct: 333 AASSIEKLNGYRYGGRPLQLSYAHYATPLPAVPTVLSGLPSVAYTPPVMHIPTTNS 388


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 171 TPAKIKPTIRITPPAMSVPTLPSEPSAVVDVSEYCTPPAINNAKPMTLSVLPSKPS 4
           TP+  + +  + P ++S   LPS  S  V +S      +++++ P+T S   S  S
Sbjct: 129 TPSSTESSSLLDPSSVSSAILPSSTSVEVSISS----SSLSSSDPLTSSTFSSLSS 180


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 118 YTHRRRRYSYRGFNLC 165
           Y H RRRY  R  N+C
Sbjct: 398 YVHYRRRYEMRDGNIC 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,583
Number of Sequences: 5004
Number of extensions: 36156
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)