Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O13
(666 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 318 8e-86
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 311 9e-84
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 311 1e-83
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 236 3e-61
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 234 2e-60
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 230 3e-59
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 197 2e-49
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 192 6e-48
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 191 1e-47
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 188 1e-46
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 169 5e-41
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 145 1e-33
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 142 7e-33
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 125 1e-27
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 122 6e-27
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 79 7e-14
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 65 2e-09
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 65 2e-09
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 64 3e-09
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 64 3e-09
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 64 3e-09
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 62 9e-09
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 62 2e-08
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 61 2e-08
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 60 5e-08
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 58 2e-07
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 57 4e-07
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 54 4e-06
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 52 9e-06
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 51 2e-05
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 50 4e-05
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 50 7e-05
UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 48 2e-04
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 48 2e-04
UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyc... 47 5e-04
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 47 5e-04
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 44 0.004
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 40 0.054
UniRef50_Q5DFQ5 Cluster: SJCHGC04650 protein; n=1; Schistosoma j... 36 0.66
UniRef50_Q5Z3H8 Cluster: Putative uncharacterized protein; n=2; ... 36 1.2
UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;... 35 1.5
UniRef50_Q2H164 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 3.5
UniRef50_Q4RQ03 Cluster: Chromosome 17 SCAF15006, whole genome s... 33 4.7
UniRef50_Q9LIQ0 Cluster: Genomic DNA, chromosome 3, BAC clone:F1... 33 6.2
UniRef50_A3ZUT1 Cluster: Probable S-layer related protein; n=2; ... 33 8.2
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 8.2
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 318 bits (781), Expect = 8e-86
Identities = 150/190 (78%), Positives = 168/190 (88%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 224 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 403
FPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++
Sbjct: 61 FPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKD 120
Query: 404 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI 583
IPGLTD V RRLGPKRAS IRKL+NL KEDDVR+YVVKR LP K+GK KPR KAPKI
Sbjct: 121 IPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK---KPRTKAPKI 177
Query: 584 QRLVTPVVLQ 613
QRL+TPVVLQ
Sbjct: 178 QRLITPVVLQ 187
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 311 bits (764), Expect = 9e-84
Identities = 152/190 (80%), Positives = 167/190 (87%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 224 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 403
FPMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120
Query: 404 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI 583
IPGLTD VPRRLGPKRAS+IRKLFNL KEDDVR+YVV++ L KEGK KPR KAPKI
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEGK---KPRTKAPKI 176
Query: 584 QRLVTPVVLQ 613
QRLVTP VLQ
Sbjct: 177 QRLVTPRVLQ 186
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 311 bits (763), Expect = 1e-83
Identities = 143/190 (75%), Positives = 162/190 (85%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 224 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 403
FPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+
Sbjct: 61 FPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQD 120
Query: 404 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI 583
IPGLTD +PRRLGPKR KIRK+FNL KEDDVR+YV++R LP KEGK K + KAPKI
Sbjct: 121 IPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKI 177
Query: 584 QRLVTPVVLQ 613
QRLVTPVVLQ
Sbjct: 178 QRLVTPVVLQ 187
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 236 bits (578), Expect = 3e-61
Identities = 114/185 (61%), Positives = 138/185 (74%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
MK N+SYP TG QK E+ D+ K IF++KRMG V+AD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 224 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 403
FPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA E
Sbjct: 61 FPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANE 120
Query: 404 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI 583
I GLTD VPRRLGPKR +K+R+LF KK D V V K L+ ++ K R KAPKI
Sbjct: 121 IAGLTDQNVPRRLGPKRLTKLRRLFGFKKADGV-AIVQKNLIRRTWTTKDGKKRQKAPKI 179
Query: 584 QRLVT 598
QRLVT
Sbjct: 180 QRLVT 184
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 234 bits (572), Expect = 2e-60
Identities = 112/189 (59%), Positives = 140/189 (74%), Gaps = 3/189 (1%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
MK N+SYP TG QK E+ D+ K IF +K+MG EV+ D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 224 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 403
FPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+KG E
Sbjct: 61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120
Query: 404 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDD---VRRYVVKRLLPAKEGKENAKPRYKA 574
I GLT +PR+LGPKRA+ I+KLF LKKEDD +++ V++R +GK+ R K
Sbjct: 121 IDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKD----RTKC 176
Query: 575 PKIQRLVTP 601
PKIQRL+TP
Sbjct: 177 PKIQRLITP 185
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 230 bits (562), Expect = 3e-59
Identities = 114/188 (60%), Positives = 136/188 (72%)
Frame = +2
Query: 35 IAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGND 214
I MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGND
Sbjct: 39 IQKMKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGND 98
Query: 215 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 394
KQGFPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG
Sbjct: 99 KQGFPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKG 158
Query: 395 AQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKA 574
EIPGLTD V ++LGPKRA+KIRKLFNL K DDVR+YV+ R + +N K R+
Sbjct: 159 TNEIPGLTDKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI-----SKNGKNRFIK 213
Query: 575 PKIQRLVT 598
PKIQRLVT
Sbjct: 214 PKIQRLVT 221
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 197 bits (480), Expect = 2e-49
Identities = 104/179 (58%), Positives = 126/179 (70%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 224 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 403
FPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS- 118
Query: 404 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 580
P RLGP R+S I K++ L +EDD ++P K + + K R A K
Sbjct: 119 ---------PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 192 bits (468), Expect = 6e-48
Identities = 87/159 (54%), Positives = 120/159 (75%)
Frame = +2
Query: 47 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGF 226
K+NV+YPATG K F+ +E R F +KR+G EVDA LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 227 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 406
PM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI
Sbjct: 61 PMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEI 120
Query: 407 PGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 523
G+T+ +P R GP+RAS RKLFNL ++DDV+++V++R
Sbjct: 121 EGVTNDALPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 191 bits (466), Expect = 1e-47
Identities = 99/191 (51%), Positives = 133/191 (69%), Gaps = 3/191 (1%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQ 220
MKLN++YP G K FE+ DE R+ + R+G EVD + G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 221 GFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLALVIVRKG 394
GFPM GVL +SRV LL+ +G + R GER+RK+VRGC++ ++++++ + I + G
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVG 120
Query: 395 AQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKA 574
Q I G+TD PRRLGPKRASKIRKLFNL + +DVR+YVV+R + K GK K R KA
Sbjct: 121 DQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRV-VKSGK---KDRLKA 176
Query: 575 PKIQRLVTPVV 607
PKIQRL+TP V
Sbjct: 177 PKIQRLITPRV 187
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 188 bits (458), Expect = 1e-46
Identities = 90/186 (48%), Positives = 127/186 (68%), Gaps = 1/186 (0%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
M++ ++YP G Q + ++ D L YEKR+G +++ + LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 224 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 403
FPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +E
Sbjct: 61 FPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKE 120
Query: 404 IPGLTDGEVPRRLGPKRASKIRKLFNL-KKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 580
I GLT VPRR GPKRAS +R +F + + D + V+KR K GK + +PK
Sbjct: 121 IDGLTTTAVPRRFGPKRASTLRAMFGITDSKFDASKLVLKR--EVKPGK------FTSPK 172
Query: 581 IQRLVT 598
+QRL+T
Sbjct: 173 VQRLIT 178
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 169 bits (411), Expect = 5e-41
Identities = 90/189 (47%), Positives = 120/189 (63%), Gaps = 5/189 (2%)
Frame = +2
Query: 47 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGF 226
K+N+S P TG K + D K + + RM +E D LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 227 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 406
PM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+V G + +
Sbjct: 68 PMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTL 127
Query: 407 PGLTDGEVPRRLGPKRASKIRKLFNL--KKEDDVRRYVVKRL---LPAKEGKENAKPRYK 571
PGLTD VP+RL PKRASKIR+LF L K D + +V L L + +N + + K
Sbjct: 128 PGLTDVVVPKRLVPKRASKIRRLFGLPTTKVDPKDQMLVCELIKELGHEVTLKNGEKKLK 187
Query: 572 APKIQRLVT 598
PK+QR+VT
Sbjct: 188 YPKVQRVVT 196
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 145 bits (351), Expect = 1e-33
Identities = 78/192 (40%), Positives = 119/192 (61%), Gaps = 2/192 (1%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
MK N++ P+TG Q E+ DE KLRI Y K++ +++D ++G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 224 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 397
FPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +SVL + ++
Sbjct: 61 FPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLLTNKN 120
Query: 398 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAP 577
++ +T+ + L KR+S +RK+ L K DD+R++ +K AK+ K
Sbjct: 121 DDLL-ITNKNSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK---IAKDFKNKV------- 169
Query: 578 KIQRLVTPVVLQ 613
KIQRL+TP+ +Q
Sbjct: 170 KIQRLITPIKIQ 181
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 142 bits (344), Expect = 7e-33
Identities = 79/135 (58%), Positives = 92/135 (68%)
Frame = +2
Query: 194 RVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLA 373
R GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLA
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLA 115
Query: 374 LVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKEN 553
L +V+KGA EI GLTD VPRRLGPKR +K+R+LF KK D R + P + GK+
Sbjct: 116 LQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKAD--RVISSEEHGPQRYGKK- 172
Query: 554 AKPRYKAPKIQRLVT 598
R KAPKIQRLVT
Sbjct: 173 ---RQKAPKIQRLVT 184
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 125 bits (301), Expect = 1e-27
Identities = 65/170 (38%), Positives = 108/170 (63%), Gaps = 2/170 (1%)
Frame = +2
Query: 86 LFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVR 265
+FE+ +++R+ Y+K++G + D +LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 266 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLG 445
L+SKG + YR RR G R+RKSVRG IV + VL L+I+R G +EI GLT+
Sbjct: 60 PLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHL 119
Query: 446 PKRASKIRKLFNLKKEDDVRRYVVKRLLPAK--EGKENAKPRYKAPKIQR 589
P++ K+RK+F + E+ ++ +L ++ + K+ K R+ +++R
Sbjct: 120 PRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRHNGKRMKR 169
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 122 bits (295), Expect = 6e-27
Identities = 53/77 (68%), Positives = 64/77 (83%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 224 FPMKQGVLTNSRVRLLM 274
FPMKQ VLT+ R+ LL+
Sbjct: 61 FPMKQDVLTHDRIHLLL 77
Score = 60.5 bits (140), Expect = 4e-08
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Frame = +2
Query: 398 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDD---------VRRYVVKRLLPAKEGKE 550
++IPGLTD PR +GPKRAS+IRKLFNL KEDD +R+ + KR+ AKE ++
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKEKRQ 139
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 79.4 bits (187), Expect = 7e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWK 181
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 64.9 bits (151), Expect = 2e-09
Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 3/183 (1%)
Frame = +2
Query: 47 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGF 226
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 227 PMKQGVLTNSRVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 403
MKQ VL + RV LL++ HS Y+P R E S++ V +S+L +VI+ G ++
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRKD 109
Query: 404 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAK--EGKENAKPRYKAP 577
IPG T +R PKR +I+ F++ +K +L K + K++ KPR K
Sbjct: 110 IPGQT-----KRWAPKRWRRIQS-FSVS---------LKTVLSTKKPQNKDSKKPRPKTH 154
Query: 578 KIQ 586
K+Q
Sbjct: 155 KVQ 157
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 64.9 bits (151), Expect = 2e-09
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 9/111 (8%)
Frame = +2
Query: 35 IAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDA--------DLLGDEWKGYV 190
+A KL +S P +G K E+ ++ KR+G ++ A +L G E+ V
Sbjct: 1 MATFKLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDV 59
Query: 191 -LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 340
L + GG DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 60 KLEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 64.1 bits (149), Expect = 3e-09
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Frame = +2
Query: 83 KLFEV-VDEHKLRIFYEKRMGAEVDADLLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTNS 256
K F++ ++ R F KR+G V A +LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 257 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 391
+ R L+S G + PR GER+RK+VRG + ++ + IV++
Sbjct: 193 KKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ 236
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 64.1 bits (149), Expect = 3e-09
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Frame = +2
Query: 35 IAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDA--------DLLGDEWKGYV 190
+A KL +S P G K E+ ++ +R+G E+ A ++ G+E
Sbjct: 1 MATFKLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADA 59
Query: 191 -LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSV 367
L++ GG DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+
Sbjct: 60 KLKITGGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQ 118
Query: 368 LALVIV 385
+ + IV
Sbjct: 119 VNMKIV 124
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 64.1 bits (149), Expect = 3e-09
Identities = 33/91 (36%), Positives = 57/91 (62%)
Frame = +2
Query: 134 RMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG 313
++G E + +LG KGY LR+ GG+DK GFPMK+ V R + L++ G + ++P + G
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKG 86
Query: 314 ERKRKSVRGCIVDANLSVLALVIVRKGAQEI 406
R+RK+VRG + ++S + + + +G Q +
Sbjct: 87 LRRRKTVRGNTIADDISQINVKVSERGEQTL 117
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 62.5 bits (145), Expect = 9e-09
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = +2
Query: 56 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFP 229
+S P TG QK+ E + ++L K++G + ++ D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIGDVISGTIV-DLPPDYELKITGGTDRDGFP 62
Query: 230 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 394
M+ + +R RLL+S G +RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 63 MRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 61.7 bits (143), Expect = 2e-08
Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
MK+N++ P G Q + DE I K +G ++ +LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 224 FPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 397
F +K+ + T R+++ + KG R +R K+++VRG I+ + +S + LV +
Sbjct: 60 FLLKKNLNTFERLKINVKKGSLGNRSHFKRKNLTKKRTVRGGILSSEISSINLVKLPNNV 119
Query: 398 QEIPGLTDGEVPRRLGPKRASKIRKLF 478
+E E ++L KR +K++ LF
Sbjct: 120 KESSVFPSKE--QKLA-KRVTKLKTLF 143
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 61.3 bits (142), Expect = 2e-08
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Frame = +2
Query: 35 IAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGND 214
+A ++ V+ P +G FEV D F + +GA VD +G + GY + + GG+D
Sbjct: 1 MATFQVAVADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSD 57
Query: 215 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 394
G PM++ V + + +L+ +G + + P DGERKR +VRG V ++ L + I G
Sbjct: 58 DAGRPMREDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEHG 116
Query: 395 AQEIPGL--TDGE 427
+ + L DG+
Sbjct: 117 EEPVAELLGADGD 129
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 60.1 bits (139), Expect = 5e-08
Identities = 42/108 (38%), Positives = 59/108 (54%)
Frame = +2
Query: 257 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPR 436
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 437 RLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 580
RLGP R+S I K++ L +EDD ++P K + + K R A K
Sbjct: 68 RLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 58.0 bits (134), Expect = 2e-07
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = -3
Query: 457 RTLGT*TAGNFTVSQSRNFLCTFADNDQG*D*KVSINNATTNRLAFPLTVTTWSVARVA- 281
RTL T +F + ++R+ DNDQ V ++ATT RLA T+ + A A
Sbjct: 114 RTLRTTETRHFGIGEARDVGVALLDNDQVQHGNVLGDDATTARLASAFTLASAVAAEAAR 173
Query: 280 -F*HQETYTAVSQDSLFHREALLVVTAGNTENITFPFV 170
H++ +T V Q +L H EALLVVT + E+++ PF+
Sbjct: 174 ALGHEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 56.8 bits (131), Expect = 4e-07
Identities = 27/94 (28%), Positives = 56/94 (59%)
Frame = +2
Query: 131 KRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 310
K++G E+ ++ E +GY L++ GG+D+ GF M+ + ++R+L+ +G Y +
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEK 84
Query: 311 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPG 412
G R+RKS+RG + +++++ +V G+ + G
Sbjct: 85 GLRRRKSLRGNTISKDITLINTKVVEYGSAPLGG 118
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 53.6 bits (123), Expect = 4e-06
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +2
Query: 134 RMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG 313
++G D L+G GY L + GG+D GFPM + + R+L+S G + PR G
Sbjct: 132 KIGDTFDGGLVG--LPGYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKG 188
Query: 314 ERKRKSVRGCIVDANLSVLALVIV 385
ER+RK+VRG + ++ + VIV
Sbjct: 189 ERRRKTVRGNTITHDIVQINTVIV 212
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 52.4 bits (120), Expect = 9e-06
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +2
Query: 98 VDEHKLRIFYEKRMGAEVDAD-LLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLM 274
VD++K ++G +A+ L+G K L++ GG+D GFPM+ V+ ++ ++L+
Sbjct: 121 VDQNKATNLVGLKIGDVFEANQLIGLPVK---LKITGGSDNSGFPMRFDVIGAAKRKILL 177
Query: 275 SKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVR 388
S G + P +GER+RK++RG + + + +IVR
Sbjct: 178 S-GPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR 214
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 51.2 bits (117), Expect = 2e-05
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Frame = +2
Query: 47 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEW---KGYVLRVAGGNDK 217
KL +S P +G + FE+ D R F ++G E+D +L D KG +R+ GG+
Sbjct: 5 KLVLSDPMSGKARQFEIKDPLAQR-FIGLKIGDELDGVILKDLIELPKGAKIRITGGSGI 63
Query: 218 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG-CIVDANLSVLALVIVRKG 394
+G PM GV + + +++ G Y P + G +K+K VRG I D+ + + A+++ K
Sbjct: 64 EGAPMHPGVPGPVK-KYILADGPPGYWPPKKGMKKKKLVRGNTISDSIVQINAVIVYPKD 122
Query: 395 AQEIPGLTDG 424
P + G
Sbjct: 123 YTGPPAIPLG 132
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = +2
Query: 131 KRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 310
K++G EVDA LG GY + + GG+D+ G P ++ + R +LL+++G + P +
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVME 88
Query: 311 GERKRKSVR 337
GERKRK +R
Sbjct: 89 GERKRKMIR 97
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 49.6 bits (113), Expect = 7e-05
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +2
Query: 137 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 316
+G D L+G G ++ GG D G PM GV + R ++L++ G + PR GE
Sbjct: 142 IGDVFDGGLIG--MPGLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGE 198
Query: 317 RKRKSVRGCIV 349
R+RKSVRG ++
Sbjct: 199 RRRKSVRGRMI 209
>UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5;
Thermoplasmatales|Rep: 30S ribosomal protein S6e -
Thermoplasma volcanium
Length = 128
Score = 48.0 bits (109), Expect = 2e-04
Identities = 34/124 (27%), Positives = 64/124 (51%)
Frame = +2
Query: 56 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMK 235
++ P TG E+ E ++ +++G EVD + GY +++ GG+ GF M+
Sbjct: 8 IADPKTGKTYKREIPSE-RMSSLIGRKIGEEVDGVFF--DLVGYKMKITGGSSVDGFAMR 64
Query: 236 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGL 415
+ T + ++L+ K S YR ++G RKR + RG I+ ++++ + L I + G I
Sbjct: 65 PDLQTQGKKQILV-KYTSGYR-GKNGIRKRITARGSIIGSDITQINLKITQYGPTPIEEK 122
Query: 416 TDGE 427
D +
Sbjct: 123 KDDQ 126
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 48.0 bits (109), Expect = 2e-04
Identities = 30/95 (31%), Positives = 49/95 (51%)
Frame = +2
Query: 131 KRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 310
K +G VD + G GY +++ GG D GF MK + R R+L + G Y P+
Sbjct: 32 KSIGDVVDGSIFG--LAGYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLP 88
Query: 311 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGL 415
G+R+RK +RG + ++ + +V G++ I L
Sbjct: 89 GQRRRKMMRGKEIAPDIVQVNAKVVEYGSKSIKAL 123
>UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyces
maris DSM 8797|Rep: Pseudouridine synthase -
Planctomyces maris DSM 8797
Length = 352
Score = 46.8 bits (106), Expect = 5e-04
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Frame = +2
Query: 215 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 394
++G K+GV S ++ L +G S + E + + +R + V+ LV +R G
Sbjct: 171 RKGVRFKEGVFRVSGLKYLKKQGKSAFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFG 230
Query: 395 AQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP-RYK 571
+ L GE RRL K+R+L N K D+R ++GK+NA P + +
Sbjct: 231 PLNLGKLKTGE-SRRLSDTELKKLRQLLNEKHSPDIRH---------RKGKKNAAPAKTR 280
Query: 572 APK 580
AP+
Sbjct: 281 APR 283
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 46.8 bits (106), Expect = 5e-04
Identities = 29/68 (42%), Positives = 39/68 (57%)
Frame = +2
Query: 137 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 316
+G+E DA LG E K +R+ GG+DK G PM+ V +R +L+S+G R G
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGG 94
Query: 317 RKRKSVRG 340
R RK VRG
Sbjct: 95 RTRKLVRG 102
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 43.6 bits (98), Expect = 0.004
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +2
Query: 137 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 316
+G E DA ++G K L++ GG+DK G PM+ + +R +L+SKG + G+
Sbjct: 33 LGQETDASVVGLNGK---LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQ 88
Query: 317 RKRKSVRGCIVDANL 361
R RK +RG V +
Sbjct: 89 RVRKLMRGNTVSEEI 103
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 39.9 bits (89), Expect = 0.054
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +2
Query: 38 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDK 217
+V+K+ VS P +G E + L Y K++G +D +G + GY L++ GG+D
Sbjct: 5 SVVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDI 59
Query: 218 QGFPMKQGV 244
GFPM++ V
Sbjct: 60 AGFPMRKEV 68
>UniRef50_Q5DFQ5 Cluster: SJCHGC04650 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC04650 protein - Schistosoma
japonicum (Blood fluke)
Length = 219
Score = 36.3 bits (80), Expect = 0.66
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 206 RRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPL 69
R++ GE ++ + LEDLH+L + RR+G P L + PL
Sbjct: 154 RKRPGEEDILLNYLEDLHKLHEAWLIERRFGPLPAPVLVFDCNAPL 199
>UniRef50_Q5Z3H8 Cluster: Putative uncharacterized protein; n=2;
Nocardia farcinica|Rep: Putative uncharacterized protein
- Nocardia farcinica
Length = 750
Score = 35.5 bits (78), Expect = 1.2
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 185 NLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LRSVPSPRA 15
NL RL DL +L P + H G P +Q+ ++IPLP T P+P A
Sbjct: 74 NLPDLRLSDLRKLPIPPSIHIPEGLPVPPGIQLPTEIPLPRFDSGTPTTTPAPTPGA 130
>UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;
n=1; Haemophilus ducreyi|Rep: Possible uroporphyrinogen
III synthase - Haemophilus ducreyi
Length = 251
Score = 35.1 bits (77), Expect = 1.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLL 166
M + ++YPA+ QKL ++ +H++ Y+ E+ ADLL
Sbjct: 1 MNVLITYPASRAQKLVDMCQQHRIFAIYQPIFSVELGADLL 41
>UniRef50_Q2H164 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 744
Score = 35.1 bits (77), Expect = 1.5
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = -1
Query: 471 LRILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL* 292
LR +A GP RRG +P +SP S P R+ R R+ ++ QP + +PS+ G
Sbjct: 361 LRSNNAPDGPARRGQTPPISPPPSETPTRSAPREAMGRILTSSQPPAATQ--TPSQTG-- 416
Query: 291 QEWP 280
Q +P
Sbjct: 417 QRYP 420
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 33.9 bits (74), Expect = 3.5
Identities = 13/61 (21%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 227 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 403
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 404 I 406
+
Sbjct: 465 L 465
>UniRef50_Q4RQ03 Cluster: Chromosome 17 SCAF15006, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 17 SCAF15006, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1364
Score = 33.5 bits (73), Expect = 4.7
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -2
Query: 392 LCGQ*PGLRLKG*HQQCNHEQTCVSS--HRHDVVCSK--SGLLTSRDVHGC*SGLPVS*G 225
LCG P L G HQ C + TC+++ ++ C++ SG R H C SG P S G
Sbjct: 363 LCGTLPDLNYCGTHQPCLNGGTCINTGPDKYQCTCAEGYSGANCERAEHACLSG-PCSNG 421
>UniRef50_Q9LIQ0 Cluster: Genomic DNA, chromosome 3, BAC
clone:F14O13; n=2; Arabidopsis thaliana|Rep: Genomic
DNA, chromosome 3, BAC clone:F14O13 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 637
Score = 33.1 bits (72), Expect = 6.2
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 413 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRL--LPAKEGKENAK 559
+ +G V ++ ++A + K +KKEDDVR+ +KRL + KE KE K
Sbjct: 287 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 337
>UniRef50_A3ZUT1 Cluster: Probable S-layer related protein; n=2;
Planctomycetaceae|Rep: Probable S-layer related protein
- Blastopirellula marina DSM 3645
Length = 749
Score = 32.7 bits (71), Expect = 8.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 17 HEAKGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGD 172
++ K L+ V+ + +Y + + +VDE +Y +RM AEV D + D
Sbjct: 544 YDLKALVRVITQSKAYQLSALPNEYNLVDEQNYSRYYPRRMQAEVMLDAVND 595
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 32.7 bits (71), Expect = 8.2
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 47 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 223
KL+ SY A L EV D+ K RI+YE A + GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEHPNVASIK---FGDITKTYVVLVEGHYDNTG 497
Query: 224 FPMKQGVL 247
+K V+
Sbjct: 498 KNLKTQVI 505
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,264,081
Number of Sequences: 1657284
Number of extensions: 13095481
Number of successful extensions: 32699
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 31696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32658
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -