Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O12
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    27   2.2  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   2.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.2  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   3.9  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    25   9.0  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    25   9.0  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.0  

>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 286 YITSCVLAAFCIYCICHCVAIAEGTLAKIYFAYISY 179
           +I   +L  +C+Y   HC+   +   AK+++  I Y
Sbjct: 108 HIPGSILLQYCMYAAYHCLGNNDLDSAKVWYFSILY 143


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 301 LTQGPLIRPFLTPPMKSSTDVIIKARKSVATLTT 402
           LT G L+R FLT P  +S  VII       TL T
Sbjct: 515 LTDGMLLREFLTEPDLASYSVIIIDEAHERTLHT 548


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 404  LKNPNILYKSTSFCMYHCCLHRYPFL 481
            L + NI+ ++ S  ++H  +++YPFL
Sbjct: 1117 LNDKNIVVRNQSLSLFHQLVNKYPFL 1142


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 359 SVLDFIGGVRNGRIKGPC 306
           S++DF+GGV    +K PC
Sbjct: 303 SMVDFVGGVLENHLKIPC 320


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 7   GFSKSYESHGSK-LSVTLWTKSGSGGGLRSP 96
           G +K+Y +  S+  +V +WTK G G   ++P
Sbjct: 218 GLTKTYLASASQDKNVFIWTKEGDGPWQKTP 248


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 322 GSRGLASDPKYIYITSCVLAAFCIYCICHCVAIAE-GTLAKIYFA 191
           G  G  + P ++Y    V  + C++  CH   ++   + + IY++
Sbjct: 105 GLAGQPTHPTFLYYIQSVAPSLCLWDACHFPPLSPYSSFSSIYWS 149


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 312 PLDPPIPYATYEVKYGRYYQSEKE 383
           P  P +P+ TY+ K   Y Q   E
Sbjct: 329 PYSPSVPFGTYQEKEKSYSQDHAE 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,298
Number of Sequences: 5004
Number of extensions: 44310
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)