Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O12
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0240 + 23851859-23851917,23852018-23852087,23852177-238533...    30   0.98 
12_02_0220 + 15833986-15834258                                         30   1.3  
02_04_0223 + 21047240-21047304,21047577-21047706,21048783-210488...    30   1.3  
02_02_0504 - 11014925-11014988,11015100-11015212,11015298-110153...    29   3.0  
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434...    27   6.9  

>04_04_0240 +
           23851859-23851917,23852018-23852087,23852177-23853394,
           23853504-23854040
          Length = 627

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +2

Query: 5   EDSLKVMSHTDQSYQSLCGQSQAVVGDLDPLSTIDKGSA*MHFPPSXXXXXRQWWVKTIT 184
           +D+L V+ H+ + Y +LC +       +D ++ +  G A    P         WW + I+
Sbjct: 136 KDALAVL-HSTRRYAALCEELGVTSRCVDAVAALAVGDASGAVPAGSSSSSPPWWARDIS 194

Query: 185 YVG 193
            +G
Sbjct: 195 ELG 197


>12_02_0220 + 15833986-15834258
          Length = 90

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 355 YLTS*VA*GMGGSRGLASDPKYIYITSCVLAAF--CI-YCICHC 233
           Y  S  A GMGG  G  +DP     TSC  A +  C+ YC  +C
Sbjct: 40  YCNSSCAGGMGGCSGACTDPASSSCTSCKQAYYYKCMNYCGSYC 83


>02_04_0223 +
           21047240-21047304,21047577-21047706,21048783-21048871,
           21049592-21049647,21049721-21049776,21050163-21050202,
           21050505-21050629,21050715-21050808,21051401-21051480,
           21051598-21051640,21057539-21057630,21057746-21057919
          Length = 347

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 301 LTQGPLIRPFLTPPMKSSTDVIIKARKSVATLTTP*KPKHIIQVY 435
           LT+ PL+ P LTPP+     V   A+ +V   T P  P  I+ VY
Sbjct: 298 LTRLPLVGPLLTPPV----SVASVAKVAVRAATDPVFPPGIVDVY 338


>02_02_0504 -
           11014925-11014988,11015100-11015212,11015298-11015378,
           11015807-11015874,11016223-11016381,11016479-11016542,
           11016656-11016738,11017297-11017461,11017913-11017964
          Length = 282

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 286 YITSCVLAAFCIYCICHCVAIAEGTLAKIY--FAYISYSL 173
           YI  C +  F ++CIC+ + ++   +  +Y  F  IS+S+
Sbjct: 53  YINICAIFFFYVHCICNKLGVSVSEVEALYELFKKISHSI 92


>11_06_0151 -
           20643032-20643085,20643202-20643307,20643415-20643495,
           20643588-20643715,20643829-20643903,20644853-20645374,
           20646622-20646687,20647990-20648076,20648173-20648247,
           20648705-20648821,20648932-20649015,20649152-20649217,
           20649352-20649417,20650079-20650150,20650231-20650332,
           20650428-20650605,20650700-20650755,20653159-20653269,
           20653354-20653422,20653558-20653741,20653826-20653914,
           20654070-20654147,20654509-20654631,20654755-20654874,
           20654975-20655055,20655285-20655431,20655533-20655611,
           20657114-20657223,20659138-20659236,20659467-20659582,
           20659673-20659781,20659839-20660069,20660152-20660417,
           20661349-20661506,20661601-20661751,20661897-20661966,
           20662203-20662232
          Length = 1451

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 264 ASTQLVIYIYLGSDARPLDPPIPYATYEVKYGRYYQSEKE 383
           A  +L + + LG D RPL PP       + + + Y  EKE
Sbjct: 644 AELKLFLEVELGPDLRPLPPPEKSKEDILLFFKLYNPEKE 683


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,348
Number of Sequences: 37544
Number of extensions: 295880
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)