Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O12
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-4|CAC42306.1|  879|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF200707-1|AAF15884.1|  879|Caenorhabditis elegans UNC-84B protein.    27   6.2  
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.    27   6.2  
AF047659-14|AAV34788.1|  429|Caenorhabditis elegans Hypothetical...    27   6.2  
AF047659-13|AAK82908.1|  503|Caenorhabditis elegans Hypothetical...    27   6.2  
AF047659-12|AAC04427.1|  507|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z70208-4|CAC42306.1|  879|Caenorhabditis elegans Hypothetical
           protein F54B11.3b protein.
          Length = 879

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 369 DNNVRT*LHRWRKEWADQGALRQTPNIY 286
           DNN  T  H W+ E+A   + R +PNI+
Sbjct: 8   DNNFDT--HEWKSEFASTRSGRNSPNIF 33


>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
           protein F54B11.3a protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 369 DNNVRT*LHRWRKEWADQGALRQTPNIY 286
           DNN  T  H W+ E+A   + R +PNI+
Sbjct: 8   DNNFDT--HEWKSEFASTRSGRNSPNIF 33


>Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical
           protein R74.8b protein.
          Length = 448

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 319 IRPFLTPPMKSSTDV-IIKARKSVATLTTP*KPKHIIQVYIFL 444
           +R F  P +++ T V + +  KSV  L  P   +H+I +Y F+
Sbjct: 239 VRVFEGPHLRNPTAVAVFEKGKSVVILCAPGNNQHVIYIYDFV 281


>Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical
           protein R74.8a protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 319 IRPFLTPPMKSSTDV-IIKARKSVATLTTP*KPKHIIQVYIFL 444
           +R F  P +++ T V + +  KSV  L  P   +H+I +Y F+
Sbjct: 239 VRVFEGPHLRNPTAVAVFEKGKSVVILCAPGNNQHVIYIYDFV 281


>AF200707-1|AAF15884.1|  879|Caenorhabditis elegans UNC-84B protein.
          Length = 879

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 369 DNNVRT*LHRWRKEWADQGALRQTPNIY 286
           DNN  T  H W+ E+A   + R +PNI+
Sbjct: 8   DNNFDT--HEWKSEFASTRSGRNSPNIF 33


>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 369 DNNVRT*LHRWRKEWADQGALRQTPNIY 286
           DNN  T  H W+ E+A   + R +PNI+
Sbjct: 8   DNNFDT--HEWKSEFASTRSGRNSPNIF 33


>AF047659-14|AAV34788.1|  429|Caenorhabditis elegans Hypothetical
           protein K07H8.2c protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 113 PYLLYLGDLSPPPLPDFVHKVTDNFDP 33
           PYL  LGDL    L   V   TD+FDP
Sbjct: 397 PYLTALGDLLGTGLLFIVFLTTDHFDP 423


>AF047659-13|AAK82908.1|  503|Caenorhabditis elegans Hypothetical
           protein K07H8.2b protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 113 PYLLYLGDLSPPPLPDFVHKVTDNFDP 33
           PYL  LGDL    L   V   TD+FDP
Sbjct: 471 PYLTALGDLLGTGLLFIVFLTTDHFDP 497


>AF047659-12|AAC04427.1|  507|Caenorhabditis elegans Hypothetical
           protein K07H8.2a protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 113 PYLLYLGDLSPPPLPDFVHKVTDNFDP 33
           PYL  LGDL    L   V   TD+FDP
Sbjct: 475 PYLTALGDLLGTGLLFIVFLTTDHFDP 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,383,123
Number of Sequences: 27780
Number of extensions: 252281
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)