Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O12
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.82 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   4.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 62  QSQAVVGDLDPLSTIDKGSA*MHFPPSXXXXXRQWWVKTITYVGEVNFCEGPL 220
           + + +   ++ +S IDK  A + FP S       +WV  +TY  E  + + PL
Sbjct: 454 RGEKIARHINSVSYIDK-VARIVFPASFGLLNICYWVIYVTYQEEFKWQDSPL 505


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 438 LSVCITVACIDIHF 479
           +S+C+TV  +++HF
Sbjct: 320 ISICVTVVVLNVHF 333


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 438 LSVCITVACIDIHF 479
           +S+C+TV  +++HF
Sbjct: 320 ISICVTVVVLNVHF 333


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 441 SVCITVACIDIHF 479
           S+C+TV  +++HF
Sbjct: 317 SICVTVVVLNVHF 329


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 330 PYATYEVKYGRYYQSEKERGNVNDAL 407
           PY   +++   YYQ +++ G+  D +
Sbjct: 82  PYNRMDMRNATYYQHQQDHGSGMDGM 107


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 421 YVWVFKASLTLPRSF 377
           +VW++  SL+LP  F
Sbjct: 21  FVWIYALSLSLPPLF 35


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 270 TQLVIYIYLGSDARPLDPPIPYAT 341
           T ++   +LG +AR   P +PY T
Sbjct: 251 TTVLTMTFLGLEARTDLPKVPYPT 274


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 415 WVFKASLTLPRSFS 374
           W++ AS+T+P S S
Sbjct: 548 WIYPASMTIPGSNS 561


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,092
Number of Sequences: 438
Number of extensions: 3469
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)